Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2247 ATGGGTTCTACATCGGTGCACGAGGACGCTGATGAACCTTTGCTAGTCCCTAGCGACCCCCCATCACCACAACCACCTTCTTTTACTCAATCATTTAGCTCGAAGCACGGATCAGATGGTGAGCTTGAGCGAATACTCACAAACACCAACATCCCTTTTCGGAAGCGTCTAGGACCTGCAACATGGGTGGAGTTCAAGCTCCTGTTTCACCTTGCTGCTCCTGCTGTTATCGTGTACCTTATCAACTATGTCATGTCTATGTCCACCCAAATCTTTTCAGGCCACCTCGGTAACCTCGAACTCGCTGCTGCTTCCCTTGGAAACACCGGCATCCAAGTCTTCGCTTATGGCCTCATGttGGGCATGGGGAGTGCCGTTGAGACGCTATGTGGACAAGCATATGGTGCGAAAAAGTTTGAGATGTTAGGCATATACTTGCAAAGATCAACGGTGCTTCTCACACTAGCGGGTGTTCTTTTAACTGTTATATACATCTTCTCTGAGCCTATTTTGATCTTTCTAGGGGAGTCCCCTAGAATTGCGTCCGCAGCAGCACTTTTTGTCTATGGTCTAATCCCTCAAATCTTTGCCTACGCTGTGAACTTCCCCATTCAAAAGTTCCTTCAGGCTCAGAGCATAGTGGCTCCAAGTGCGTACATTTCAACAGCAACGTTGTTGATCCACCTCGTGTTGAGTTGGGTGGTGGTGTACGAGGTGGGGCTTGGCTTATTGGGTGCGTCGCTGGTGTTGAGTATTTCGTGGTGGATCATTGTGATTGCGCAGTTTGTGTATATTGTGAAGAGTGAAAGGTGTAAGCACACGTGGAGGGGGTTCAGTTTTCAAGCGTTTACAGGGTTGCCAGAGTTCTTCAAGTTGTCAGCAGCATCAGCGGTGATGCTGTGCCTAGAGACATGGTACTTccaaattttggttttgcttGCGGGGTTGCTTCCTCACCCTGAGTTGGCTCTGGATTCCCTTGCTATTTGTACCACAGTGTCTGGATGGGTTTTCATGATCTCGGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAATGAACTCGGGGCAAGAAATCCAAAATCAGCCTCATtttcggtggtggtggtgacagtgatTTCTTTCATAATATCGGTTATTGTAGCTGTGGTGGTGCTTGCAATGCGAGATGTCATTAGCTATGCCTTCACAGAGGGCGAAGAGGTCGCTGCTGCTGTCTCAGATCTTTGTCCTCTCCTTGCTCTTTCTATTGTCCTCAACGGCATTCAACCTGTCTTATCTGGGGTGGCCGTTGGATGTGGGTGGCAAACTTTTGTTGCGTATGTGAACGTTGGTTGTTATTATGGGATTGGCATACCATTGGGTTCGCTTCTCGGTTTCTACTTCAAACTCAGTGCTAAGGGAATATGGTTGGGAATGCTAGCTGGCATGGTTTtgcaaacaattattttagtGTGGATCACATTTCGAACGGATTGGAATAAAgagGTTGAAGAAGCAGCAAAGAGGTTGAACAAGTGGGAGGACAAAACGGAGCCACTTGTCAAGAACTGA 1557 0.4599 MGSTSVHEDADEPLLVPSDPPSPQPPSFTQSFSSKHGSDGELERILTNTNIPFRKRLGPATWVEFKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFEMLGIYLQRSTVLLTLAGVLLTVIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLLIHLVLSWVVVYEVGLGLLGASLVLSISWWIIVIAQFVYIVKSERCKHTWRGFSFQAFTGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLAICTTVSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTVISFIISVIVAVVVLAMRDVISYAFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSLLGFYFKLSAKGIWLGMLAGMVLQTIILVWITFRTDWNKEVEEAAKRLNKWEDKTEPLVKN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2247 518 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g2247 518 Pfam MatE 74 234 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2247 518 Pfam MatE 296 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2247 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 505 - -
Ssu3g2247 518 TIGRFAM matE: MATE efflux family protein 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2247 518 PANTHER PROTEIN DETOXIFICATION 19 505 - -
Ssu3g2247 518 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Ssu3g2247 518 Coils Coil 491 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2247 Ssu-Chr3 72383688 72390856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2247 K03327 - gmx:100801718 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2247 3 72383688 72390856 Ssu3g2247 3 72383688 72390856 ECH
Ssu8g0787 8 12957578 12965314 Ssu3g2247 3 72383688 72390856 PCT