Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0784 ATGACTTGGAAAAGCAGGGGAGACCTGCTTCCTAAAAGTGTCATGTCTCAGAAATGGGTGATTTTTCTGTGTATTGGAAGCTTCTGTGCTGGGATGGTTTTCACCAACAGGATGTGGACTATTCCTGAACCTAAAGGACTTGCACGGACAACAGCCATGGAAGCTGAAAAATTGAATGTGGTTTCAGAGGGTTGTAATTCGAGAATTTTGCAAGAGAAGGAAGTGAAGCGTGTAACTAAAGGCATCTATAGTGAGATTTTCAAGTCACAAAATGCCATACAAACCCTGGACAAGACTATTTCAAACTTGGAGATGGAATTGGCTGCTGCAAAGGCAACTCAGGAGTCTATACGCAATGGTGCTCCAGTATCAGAAGATATCAGGATGAGTGAATCATCTGGTAGGAGAAGGTACCTAATGGTCGTAGGAATTAATACTGCTTTCAGCAGCCGAAAAAGAAGAGACTCAGTTCGTGAGACATGGATGCCACAAGgtgagaaaagaaagaagctaGAGGAAGAGAAGGGCATTATCATCCGCTTTGTAATTGGTCATAGTGCCTCATCAGGGGGTATCCTAGACAGATCTATTGAAGCAGAAGATAAGAAGCATGGAGATTTCCTGAGATTGGATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGCGACACTGGGACACACTCTAGTGAGACACCGATCAAAACCGCGGGTGTACATAGGATGCATGAAATCTGGGCCTGTTCTTTCTCAAAAAGGGGTGAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTTCGTCATGCCACGGGACAGTTGTATGCCATTTCAAAAGATCTGGCtacatatatttcaattaaccAGCACGTTCTTCACAAGTATGCCAATGAGGATGTCTCACTAGGATCTTGGTTTATTGGACTTGATGTGGACCACATAGACGATAGAAGACTCTGCTGTGGTACTCCACCAGATTGTGAATGGAAAGCGCAGGCAGGCAACGTTTGTGTTGCTTCATTTGATTGGACCTGCAGTGGAATTTGCAGGTCTGCTGAAAGGATCAAGGAGGTTCACAAGAGATGTGGGGAGGGTGAGAAAGCTTTGTGGAGTGCCTCTTTCTAA 1224 0.4265 MTWKSRGDLLPKSVMSQKWVIFLCIGSFCAGMVFTNRMWTIPEPKGLARTTAMEAEKLNVVSEGCNSRILQEKEVKRVTKGIYSEIFKSQNAIQTLDKTISNLEMELAAAKATQESIRNGAPVSEDIRMSESSGRRRYLMVVGINTAFSSRKRRDSVRETWMPQGEKRKKLEEEKGIIIRFVIGHSASSGGILDRSIEAEDKKHGDFLRLDHVEGYLELSAKTKTYFATAVNLWDADFYIKVDDDVHVNIATLGHTLVRHRSKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISKDLATYISINQHVLHKYANEDVSLGSWFIGLDVDHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWTCSGICRSAERIKEVHKRCGEGEKALWSASF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0784 407 Coils Coil 93 113 - -
Ssu8g0784 407 PANTHER HEXOSYLTRANSFERASE 8 399 - -
Ssu8g0784 407 Pfam Galactosyltransferase 152 349 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu8g0784 407 Pfam Domain of unknown function (DUF4094) 16 112 IPR025298 -
Ssu8g0784 407 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 399 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu8g0784 407 Gene3D - 136 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0784 Ssu-Chr8 12884338 12887912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0784 1 407 Glycosyltransferase AT1G05170 77.396 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0784 K20855 - gmx:100793931 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0784 8 12884338 12887912 Ssu8g0784 8 12884338 12887912 ECH
Ssu8g0784 8 12884338 12887912 Ssu3g2255 3 72508831 72511608 PCT