Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2255 atgacttGGAAAAGTAGAGGAGAATTACCTTCTAGAAGCGTTATATCGCAGAGATGGGCACTGTTTCTGTGCTTAGGAAGCTTCTGTGCTGGAATGCTCTTCACTACCAGGATATGGACTATTCCTGAACACAACAAAGGACTAGCACGACCAACGGCTTCGGAAGCTGAAAAATTGAATGTGGTTTCAGAAGGTTGCAATTCCAGAATTTTGCAAGAGATGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTTCAAGAGTCATAATTCCATACAAACATTGGACAAGACTATTTCAAACTTGGAGATGGAATTGGCTGCTGCAAGGGCAGCTCAGGAGTCTCTACGAAGTGGTGCTCCTGTTCCAGATGATATAAGGATGAGTGAATCATCAGGTAAGAGAAAGTACCTTATGGTCGTTGGCATTAATACTGCATTTAGCAGCAGGAAAAGAAGGGACTCGGTTCGGGCCACATGGATGCCACAAGgtgagaaaagaaagaagctaGAGGAAGAGAAGGGCATTATCATCCGCTTTGTAATTGGACACAGTGCTACATCAGGGGGTATTCTTGACAGAGCTATTGAAGCCGAGGACAGAAAGCATGGGGATTTCTTGAGGCTgAATCATGTGGAAGGATACCTTGAATTGTCAGCAAAGACAAAAGCCTACTTTGCCGCTGCTGTGAACTTATGGGATGCTGATTTCTATGTCaaagttgatgatgatgttcATGTAAATATAGCAACACTGGGAGAAACTCTAGTTAGACACCGATCAAAACCACGGATATACATTGGATGCATGAAATCTGGACCTGTCCTATCTCAAAAAGGGGTAAGGTACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAACAAATATTTCCGTCATGCCACAGGGCAGTTGTATGCCATTTCAAACGATTTGGCTACATACATATCAATTAACCAGTAA 969 0.4107 MTWKSRGELPSRSVISQRWALFLCLGSFCAGMLFTTRIWTIPEHNKGLARPTASEAEKLNVVSEGCNSRILQEMEMKRDKDIYGEVFKSHNSIQTLDKTISNLEMELAAARAAQESLRSGAPVPDDIRMSESSGKRKYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKAYFAAAVNLWDADFYVKVDDDVHVNIATLGETLVRHRSKPRIYIGCMKSGPVLSQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISNDLATYISINQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2255 322 Coils Coil 93 113 - -
Ssu3g2255 322 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 321 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu3g2255 322 Pfam Galactosyltransferase 152 321 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu3g2255 322 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 4-RELATED 7 321 - -
Ssu3g2255 322 Gene3D - 135 321 - -
Ssu3g2255 322 Pfam Domain of unknown function (DUF4094) 16 112 IPR025298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2255 Ssu-Chr3 72508831 72511608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2255 1 322 Glycosyltransferase AT1G05170 74.923 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2255 K20855 - gmx:100794838 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2255 3 72508831 72511608 Ssu3g2255 3 72508831 72511608 ECH
Ssu8g0784 8 12884338 12887912 Ssu3g2255 3 72508831 72511608 PCT