Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0754 ATGGATTGCCGCATCTATGGCGTCTCCAACCTCGTCATCTTCTCCACCCTTCTCTTCCTTGTTTCCGTTTTCCCGCAGGCATTAACGGAGCGGGTCTCTTCTTCTTCGTCACCGACGGGTCAGATTAACTCGAACTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAGCTCGCGGAGCTGGTGGAGAAGGCCATGCTGTTACAAACGCTAGAAGACACCGTGGCCACTCACAACATAACCATCTTCGCTCCGACAAACGAAGCTTTAGACCGAAACCTCGACCCCGATTTCAAGCGGTTCCTCCTCGAACCCGCGAACCTCCACTCCCTCCAAACCCTCCTTCTCTCTCACATCATCCCCACCCAAATCGGATCCCAAACCCTCACCCGCCACGTCACCACCCTCTCCAACCACCGCCTCCACCTCGCCGCAAACCTCACCACCGTCGACGAGGCCCGGGTCACCCGCCCGGATGCGATGACCCGACCCGACGGCGTCATCCATGGCATCGACCGCCTCCTCCTTCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGGAGCCTCCGCTCCATCACCGCCGTCAAGCCGGAGCCCGCCCCGGAGGTCGACCCGAGAACCCACCGTCTGAAAAAGCCTCCCCCGCCAACGAAGCCTGGCTCCCCGCCGGCGCTTCCGATCTACGACGCCCTTGCTCCGGGGCCCGCCCTGGCTCCGGCGCCGGCGCCGGGACCGGGAGGGCCGCACCACCACTTCAACGGCGAGAGGCAGGTGCGGGATTTCATCGAGACGCTGCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTGAACCTGACGTCGTTGGCCACCGAAATGGGTCGGTTGGTGTCGGAGGGTTACGTGCTCACCGTTCTGGCGCCGAACGACGAGGCGATGGCGAAGCTGACGACGGAGCAGTTGAGCGAGCCGGGGGCGCCGGAGCAGATAATGTACTACCATATCGTGCCGGAGTACCAGACGGAAGAGAGCATGTACAATGCGGTTCGGAGGTTCGGGAAGGTTCGTTATGATACTCTGCGATTGCCGCACAAGGTGGTGGCGCAGGAGGCCGATGGGTCGGTTAAATTCGGGCACGGGGACGGGTCGGCGTATTTGTTCGACCCGGATATTTATACGGATGGCCGGATCTCGGTGCAGGGGATTGATGGGGTTTTGTTTCCGACGGAGGAGGAGCAGGCGGAGCGGGTTAAACCCGTTACCCAGACGGGTCAACCCGCCGCAAAAGTTGTTAAGCACAGGAGAGGAAAATTGCTGGAAGCAGCGTGCTGGATGCTTGGAACCTTTGGGCAGCATTCTAGATTCGCCTCTTGTCAATGA 1371 0.609 MDCRIYGVSNLVIFSTLLFLVSVFPQALTERVSSSSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQTLEDTVATHNITIFAPTNEALDRNLDPDFKRFLLEPANLHSLQTLLLSHIIPTQIGSQTLTRHVTTLSNHRLHLAANLTTVDEARVTRPDAMTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSITAVKPEPAPEVDPRTHRLKKPPPPTKPGSPPALPIYDALAPGPALAPAPAPGPGGPHHHFNGERQVRDFIETLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIVPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTEEEQAERVKPVTQTGQPAAKVVKHRRGKLLEAACWMLGTFGQHSRFASCQ 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0754 456 SUPERFAMILY FAS1 domain 44 179 IPR036378 -
Ssu8g0754 456 SMART fasc_3 301 406 IPR000782 -
Ssu8g0754 456 SMART fasc_3 82 179 IPR000782 -
Ssu8g0754 456 Gene3D FAS1 domain 255 406 IPR036378 -
Ssu8g0754 456 Gene3D FAS1 domain 25 179 IPR036378 -
Ssu8g0754 456 ProSiteProfiles FAS1/BIgH3 domain profile. 43 176 IPR000782 -
Ssu8g0754 456 ProSiteProfiles FAS1/BIgH3 domain profile. 260 388 IPR000782 -
Ssu8g0754 456 MobiDBLite consensus disorder prediction 192 255 - -
Ssu8g0754 456 SUPERFAMILY FAS1 domain 239 406 IPR036378 -
Ssu8g0754 456 MobiDBLite consensus disorder prediction 216 231 - -
Ssu8g0754 456 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 456 IPR044654 -
Ssu8g0754 456 Pfam Fasciclin domain 55 178 IPR000782 -
Ssu8g0754 456 Pfam Fasciclin domain 295 405 IPR000782 -
Ssu8g0754 456 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0754 Ssu-Chr8 12322604 12325414 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0754 - - gmx:100815434 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0754 8 12322604 12325414 Ssu3g2283 3 73038241 73040847 PCT