Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2283 ATGGATTGCCGCATCTATGGCGTTACCgtcctcctcttcctcctcccAACCCTCACATTCTCCCTCTCGCAGGGCCAGATAAACTCAAACTCAATCCTCGTGGCTTTATTAGACTCGCATTACACGGAAGTAGCAGAGCTAGTCGAAAAAGCCATGCTCCTCCAAACACTGGAAAACACGGTAATGACCCACAACATCACCATCTTCGCACCCAGAAACGAAGCCCTCGAACGCGATCTCGATCCCGACTTCAAGCGCTTCCTCCTCGAACCCCGCAACCTCCCCTCCCTCCAAACCCTCCTCATGTCCCACATCGTCCCCAAAAGAATCCCCCAACATGCCGGGTCGGGTCATCCGACCCGGTTCCAGACCCTCGCTTCACACCACCACGTCACTCTCCAGACCCTAAATTCAACCCACTGGACCGTCGAGTCTTCCCGGATCACCCACCCGGATTCGGTGACCCGACCCGATGGCGTCATCCACGGCATCGGCTCCCTCCTCATCCCACGCTCCGTCCAGGACGACTTCAACGGCCGCCGGAGCCTCCGCTCCATCGCCGCCGTGAAACCCGAGCCCGCCCCGGAGGTCGACCCCCGCACCCACCGTTTAAAGAAACCGGCGCCGCCGCAGAAACCCGGTTCTCCGCCGGCGCTGCCGATCTACGACGCGATGGCCCCGGGGCCGTCCCTCGCTCCGGCGCCGGCGCCGGGACCCGGCGGGCCCCACCACCACTTCAACGGCGAGAAGCAGGTGAAGGACTTCATCCAGACGCTCCTCCATTACGGCGGGTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCGCTGGCGACGGAGATGGGACGGCTGGTTTCGGAGGGTTACGTTTTGACGGTGTTGGCTCCTAACGACGAGGCCATGGCGAAGTTAACGACGGACCAGTTGAGTGAGCCGGGTTCGCCCGAACAGATTATGTACTACCACTTGATTCCTGAGTATCAGACTGAAGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTCCGTTACGACACGTTACGGTTGCCGCACAAGGTGACGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGGCACGGAGACGGGTCGGCGTATTTGTTCGACCCGGATATTTACACGGACGGACGGATCTCCGTGCAGGGTATCGACGGCGTTCTGTTTCCGCCTCAGGAAAATGAGGTTGGGCCCGTGACCCGAGCCCAACCCGCTAAGGTCGTGGTTAAGCAGAGAAGAGGAAAATTGTTGGAAGCAGCATGTTGGATGCTTGGAACTTTTGGACAGAATTCTAGATTCACCTCTTGTCAATAA 1335 0.576 MDCRIYGVTVLLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMTHNITIFAPRNEALERDLDPDFKRFLLEPRNLPSLQTLLMSHIVPKRIPQHAGSGHPTRFQTLASHHHVTLQTLNSTHWTVESSRITHPDSVTRPDGVIHGIGSLLIPRSVQDDFNGRRSLRSIAAVKPEPAPEVDPRTHRLKKPAPPQKPGSPPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPQENEVGPVTRAQPAKVVVKQRRGKLLEAACWMLGTFGQNSRFTSCQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2283 444 SUPERFAMILY FAS1 domain 31 171 IPR036378 -
Ssu3g2283 444 SMART fasc_3 293 398 IPR000782 -
Ssu3g2283 444 SMART fasc_3 67 171 IPR000782 -
Ssu3g2283 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 444 IPR044654 -
Ssu3g2283 444 ProSiteProfiles FAS1/BIgH3 domain profile. 28 168 IPR000782 -
Ssu3g2283 444 Gene3D FAS1 domain 32 171 IPR036378 -
Ssu3g2283 444 Gene3D FAS1 domain 244 398 IPR036378 -
Ssu3g2283 444 MobiDBLite consensus disorder prediction 209 223 - -
Ssu3g2283 444 MobiDBLite consensus disorder prediction 184 243 - -
Ssu3g2283 444 Pfam Fasciclin domain 40 170 IPR000782 -
Ssu3g2283 444 Pfam Fasciclin domain 277 397 IPR000782 -
Ssu3g2283 444 SUPERFAMILY FAS1 domain 231 398 IPR036378 -
Ssu3g2283 444 ProSiteProfiles FAS1/BIgH3 domain profile. 252 380 IPR000782 -
Ssu3g2283 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2283 Ssu-Chr3 73038241 73040847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2283 - - gmx:100790599 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0754 8 12322604 12325414 Ssu3g2283 3 73038241 73040847 PCT