Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0716 ATGAGCAAGGAATGCGGCCACCACGACGAGGAGCGCCGGCAGCTCCTCCGCCGCGTGTTGGCGGCGATCCTCGGCTTCATTATTCTCATCCTGCTGGTAATCTTCCTCATCTGGATCATCCTCCGACCCACCAAGCCCCGCTTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTCCTCCACCGGCGACAACCCCTCCCCCACCGCCCCCACCCCCAACACCCTCACCCTCACCATGCAGGTCACCCTCGCCGCCTTCAACCCCAACCACCGCATCGGCGTTTACTACACCACCCTCGACGCCTACGCCGCCTACCGCGGCCAGCAGATCTCCCTCGCCACCGCGCTTCCCCCCACCTACCAGGGCCACCGCGACACCGCCGTCTGGTCGCCGTTCCTGTACGGCGCCGCCGTGCCGGTCTCCCCCTTCGTGCTGGAGATTCTGCAGCAGGACAAGGCCTCCGGCGGAGTGCTGGTCAACGTCAAGGTCAACGGAAGGGTCAAGTGGAAAGTGGGGACTTGGGTCTCCGGCAGGTACCATATTTATGTGAACTGTCCGGCGTATATCAGGCTCGCCGGCGACCGCGATGACGCCATCGGAGTGGCCGGTCCAGCGGTGAAGTTTCAGCTTTTCCAAAGTTGCATTGTTGATGTTTAG 663 0.632 MSKECGHHDEERRQLLRRVLAAILGFIILILLVIFLIWIILRPTKPRFVLQDATVYAFNLSSTGDNPSPTAPTPNTLTLTMQVTLAAFNPNHRIGVYYTTLDAYAAYRGQQISLATALPPTYQGHRDTAVWSPFLYGAAVPVSPFVLEILQQDKASGGVLVNVKVNGRVKWKVGTWVSGRYHIYVNCPAYIRLAGDRDDAIGVAGPAVKFQLFQSCIVDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0716 220 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
Ssu8g0716 220 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 7 220 - -
Ssu8g0716 220 PANTHER OS05G0367900 PROTEIN 7 220 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0716 Ssu-Chr8 11729451 11730113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0716 13 187 EF-hand Containing Proteins AT5G21130 22.727 2.06e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0716 - - pvu:PHAVU_005G120900g 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0716 8 11729451 11730113 Ssu8g0716 8 11729451 11730113 ECH
Ssu8g0716 8 11729451 11730113 Ssu3g2310 3 73707537 73708163 PCT