Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2310 ATGTCCACGAAGGAGTGCGGCCACCACGAGGCAGAGCGCCGGCACCTCCTCCGCCTCATCCTCGGCGGCTTGGCAGCCTTCGTCCTCCTCGTCCTCCTCCTCGTCTTCCTCGTATGGGTCATCCTCCGCCCCACGAAGCCCCGCTTCACGCTGCAAGACGCCACCCTCTACGCCTTCAACCTCTCCCCGCCCGCCCCCAACACCCTCTCCCTCACCGTGCAGGCCACCCTCTCCGCCCACAACCCCAACGCCCGCGTCGGCGTCTACTACCACGGCCTCCGCGCCTACGCCTCCTACCGCAGCCAGCAGATCTCGCTCGCCACCGCTCTCCCCGACGCCTACCAGGGCCACCGCGACTTCACCGTCTGGTCGCCGTTCCTGTTCGGCAACGCCGTGCCCGTGGCGCCGTTTGTGCTGGCCTCCCTGCAGCAGGACCAGAGTGCCGGGCCGGTTCTGGTCAACGTCAAGGTCAGCGGCAGGGTCAAGTGGAAGGTCGGGAGTTGGGTCTCTGGGAGGTACCATATTTATGTCAACTGCCCCGCGTACATTAGGTTCGCCGGTGATCGGAGCAATGCCGCTCCGGCGGTGAAGTTTCAGCTCTTGCAAAGTTGCAGTGTTGATGTGTAG 627 0.6539 MSTKECGHHEAERRHLLRLILGGLAAFVLLVLLLVFLVWVILRPTKPRFTLQDATLYAFNLSPPAPNTLSLTVQATLSAHNPNARVGVYYHGLRAYASYRSQQISLATALPDAYQGHRDFTVWSPFLFGNAVPVAPFVLASLQQDQSAGPVLVNVKVSGRVKWKVGSWVSGRYHIYVNCPAYIRFAGDRSNAAPAVKFQLLQSCSVDV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2310 208 Pfam Late embryogenesis abundant protein 76 179 IPR004864 -
Ssu3g2310 208 PANTHER OS05G0367900 PROTEIN 5 208 IPR044839 GO:0098542
Ssu3g2310 208 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 5 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2310 Ssu-Chr3 73707537 73708163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2310 14 203 EF-hand Containing Proteins AT5G21130 22.917 1.50e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2310 - - gmx:100812905 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2310 3 73707537 73708163 Ssu3g2310 3 73707537 73708163 ECH
Ssu8g0716 8 11729451 11730113 Ssu3g2310 3 73707537 73708163 PCT