Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0714 ATGATTTCACCGCAAACAAAACAAGCCTTCGGTTCACTCCTCCTCCTTTTCCTCGTGCTGCCGCAGAAGCGATTCGACATGGGCCTCGTCGACGAAGACCCCAATTCGAAGCCGATCCTGATCCGCGAGGTGTGGGCCTCCAACCTCGAATCAGAATTCGAGATGATTCGCGAAGTGATCGATAGTTACCCTTTCATCTCCATGGACACCGAGTTTCCCGGCGTTATTTTTCGCCCCCATGTTGTGGACCCCGCAAAGCCCTACCTCCGCCGCCACCTCAAACCCTCCGACCACTACCGATTCCTCAAGTCCAACGTTGACGCACTTAACCTCATCCAGGTCGGCCTCACCCTCTCCGACTCCGACGGCAACCTCCCCCACCTCGGCACCGGCAACCGCTTCATCTGGGAATTCAACTTCCGCGACTTCGACGTCGAGCGCGACGCCCACGCGCCCGACTCCGTCGATCTCCTCCGCCGCCAGGGGATCGACTTCCGCCGCAACGCCGCCGAGGGCGTCGACTCGGCGCGCTTCGCGGAGCTCGCGATGTCGTCGGGACTCGTCTGCAACGACTCGGTGAGTTGGGTCACGTTTCACAGCGCGTACGATTTCGGGTACTTGGTCAAGATCCTGACCCGACGGACCCTGCCCAGCGGGTTGGAGGAGTTCTTGAAGATGCTGAGGGCGTTTTTCGGGAACAACGTTTACGACATCAAGCACATGATGCGGTTCTGCGACACACTTTATGGCGGTCTGGACCGCCTCGCGCGAACCCTTAACGTGGACCGGGCCGTTGGGAAGTGCCACCAGGCCGGGTCTGACAGCCTCCTGACGTGGCACGCGTTTCAGAGAATGAGGGATATTTATTTCGTGAAGGATGGGCCCCAGAAACATGCCGGGGTCTTGTTTGGGTTGGAGCTCACTTGTTCTGTCAGTTGA 939 0.59 MISPQTKQAFGSLLLLFLVLPQKRFDMGLVDEDPNSKPILIREVWASNLESEFEMIREVIDSYPFISMDTEFPGVIFRPHVVDPAKPYLRRHLKPSDHYRFLKSNVDALNLIQVGLTLSDSDGNLPHLGTGNRFIWEFNFRDFDVERDAHAPDSVDLLRRQGIDFRRNAAEGVDSARFAELAMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRTLPSGLEEFLKMLRAFFGNNVYDIKHMMRFCDTLYGGLDRLARTLNVDRAVGKCHQAGSDSLLTWHAFQRMRDIYFVKDGPQKHAGVLFGLELTCSVS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0714 312 Pfam CAF1 family ribonuclease 44 174 IPR006941 -
Ssu8g0714 312 SUPERFAMILY Ribonuclease H-like 41 304 IPR012337 -
Ssu8g0714 312 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 36 307 - -
Ssu8g0714 312 Gene3D - 30 308 IPR036397 GO:0003676
Ssu8g0714 312 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 36 307 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0714 Ssu-Chr8 11689008 11689946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0714 K12581 - gmx:100817875 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0714 8 11689008 11689946 Ssu8g0714 8 11689008 11689946 ECH
Ssu8g0714 8 11689008 11689946 Ssu3g2316 3 73780518 73781372 PCT