Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2316 ATGGGCGTTCTCGGCGAAGACAACCCGAACCCGAACCCGGTCGTGATCCGCGAGGTTTGGGCCTCAAACCTGGAGTCCGAGTTCCAACTCATCCGCGAACTCATCGACCGCTACCCTTTCATCTCGATGGACACCGAGTTTCCCGGCGTCATTTTCCGGCCACACGTGGACCCCGGCAAGCCCTACAACCACCGCAGCCGCCGCCCCTCCGACCACTACCGCCTCCTCAAGTCCAACGTCGACGCCCTCAACCTCATCCAGGTCGGCCTCACCCTCTCCGACGCCGCCGGCAACCTCCCCGACCTCGGCGCCGCCGGGAACCGCTTCATCTGGGAATTCAACTTCCGCGACTTCGACGTCGCGCGTGACGCCTACGCGCCGGACTCCATCGCCCTGCTCCGCCGCCAGGGGATCGATTTCGACCGCAACGCCGCGGAGGGCGTGGACTCCACGCGCTTCGCGGAGTTGATGATGTCCTCGGGACTCGTCTGCAATGACTCGGTGAGTTGGGTTACCTTTCACAGTGCTTATGATTTCGGGTACTTAGTGAAGATCCTGACCCGACGGAATTTACCGACCCGGTTGGAAGAATTCTTAAGGGTGGTGAAAGTGTTCTTTGGGGATAAGGTTTATGATGTAAAGCACATGATGAGGTTCTGTGATACACTCTACGGCGGTTTGGATCGGGTTGCACGGACCCTTAACGTGGACCGTGCCGTAGGGAAGTGCCACCAGGCCGGGTCAGACAGCTTGCTGACCTGGCACGCCTTCCAGAAGATTGTAGACCTTTATTTTGTAAAGGATGAGCACCAAAAACATGCCGGTGTGTTGTATGGATTAGAGGTCCTttgttaa 855 0.5813 MGVLGEDNPNPNPVVIREVWASNLESEFQLIRELIDRYPFISMDTEFPGVIFRPHVDPGKPYNHRSRRPSDHYRLLKSNVDALNLIQVGLTLSDAAGNLPDLGAAGNRFIWEFNFRDFDVARDAYAPDSIALLRRQGIDFDRNAAEGVDSTRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRNLPTRLEEFLRVVKVFFGDKVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDLYFVKDEHQKHAGVLYGLEVLC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2316 284 Pfam CAF1 family ribonuclease 19 149 IPR006941 -
Ssu3g2316 284 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 12 282 - -
Ssu3g2316 284 Gene3D - 5 282 IPR036397 GO:0003676
Ssu3g2316 284 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 12 282 IPR039637 GO:0004535|GO:0030014
Ssu3g2316 284 SUPERFAMILY Ribonuclease H-like 10 281 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2316 Ssu-Chr3 73780518 73781372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2316 K12581 - gmx:100811298 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2316 3 73780518 73781372 Ssu3g2316 3 73780518 73781372 ECH
Ssu8g0714 8 11689008 11689946 Ssu3g2316 3 73780518 73781372 PCT