Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0694 ATGACCGAGGTCCTCCACTCCCCACCCCATTTTGCTGCAACAACAAAGACAAGGACAacctcaaccacaacaacctCAACCCCTTCCTCTTCATTCTCTTGCAATGCCTTTCTCCGATCTCACCTCTCTCTCTTGGTGCTTCTCTTGACCCTTCTCAGGAAATCCTTCCTCCCTCGCAAAAACCTCTGCCACATGGACATAGGCTCCCCCACTAACGTGCGCCATGTTGCGCACGTCACCTTTGATAGGTTCAACGGTTTCTTGGGTTTGCCTGTTGAGTTCGAACCTGAAGTCCCCAGAAGGCCTCCTAGCGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCAAGAGGGAACAGTGTGCCAACGATTCTGCTGTTGATGCAAAGGCATTTGTATGCTCAAGGAGGGTTGCAGGTGGAGGGGATTTTCAGAATTAATGCAGACAATGGTCAGGAGGAACATGTTAGGGATCAATTGAATTTGGGACTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTACTGGCATTCTGGATTCATTATCACCGGAGCAGGTAATGCAATGCCAGACTGAGGAGGAATGTGCTGAAATAGTGAGGCATCTACCTCACACTGAAGCTTCACTCTTAGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACATGAACATGTTAATAAGATGAACGCACGTAATATTGCCATGGTTTTTGCACCAAACATGACTCAGATGGAAGACCCTTTCACTGCATTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACACTTATATTAAGGACAGTGCGGGAAAGAAAGGATTCTGTGGTAGAATCTTATCCTAGATTTTATTTAGAACCTTCTGATGATAACGGAAACCATAGACTTTCGGAGTCCTTCCAGCAAGATACTCCTGCAGAAAATGAAGAGCCTTgggaaaactttgttttagagAAAACCGCCTTAGAGTGTCCCCGTGAATCACTCCAAAACAACTCAACTGGAGAAGAATCTGTCAGCTTGACAAACTCTTCTGAGAATCTTGTTTGCGATGGGGATTTGTATTGTGAGTTTCCACCCGTAGGAAACATGGGGAAGGGTAAAACTGGCCAATCGAGTAGGTCAAATGCTAGAAAAGAGCCCAAAAGGACCAGAGGGAGCAGCAACCAGTGA 1233 0.4453 MTEVLHSPPHFAATTKTRTTSTTTTSTPSSSFSCNAFLRSHLSLLVLLLTLLRKSFLPRKNLCHMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINADNGQEEHVRDQLNLGLVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEEECAEIVRHLPHTEASLLDWAINLMADVVQHEHVNKMNARNIAMVFAPNMTQMEDPFTALMYAVQVMNFLKTLILRTVRERKDSVVESYPRFYLEPSDDNGNHRLSESFQQDTPAENEEPWENFVLEKTALECPRESLQNNSTGEESVSLTNSSENLVCDGDLYCEFPPVGNMGKGKTGQSSRSNARKEPKRTRGSSNQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0694 410 MobiDBLite consensus disorder prediction 314 328 - -
Ssu8g0694 410 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 379 - -
Ssu8g0694 410 Gene3D Rho GTPase activation protein 100 296 IPR008936 GO:0007165
Ssu8g0694 410 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g0694 410 PANTHER MKIAA1688 PROTEIN 1 379 IPR044785 GO:0005096
Ssu8g0694 410 CDD RhoGAP 129 285 - -
Ssu8g0694 410 ProSiteProfiles Rho GTPase-activating proteins domain profile. 112 297 IPR000198 GO:0007165
Ssu8g0694 410 SUPERFAMILY GTPase activation domain, GAP 107 286 IPR008936 GO:0007165
Ssu8g0694 410 MobiDBLite consensus disorder prediction 380 410 - -
Ssu8g0694 410 ProSiteProfiles CRIB domain profile. 67 80 IPR000095 -
Ssu8g0694 410 MobiDBLite consensus disorder prediction 303 329 - -
Ssu8g0694 410 CDD CRIB 65 105 - -
Ssu8g0694 410 MobiDBLite consensus disorder prediction 12 30 - -
Ssu8g0694 410 SMART PBD_5 67 101 IPR000095 -
Ssu8g0694 410 Pfam RhoGAP domain 129 263 IPR000198 GO:0007165
Ssu8g0694 410 Pfam P21-Rho-binding domain 66 93 IPR000095 -
Ssu8g0694 410 SMART RhoGAP_3 126 289 IPR000198 GO:0007165
Ssu8g0694 410 MobiDBLite consensus disorder prediction 393 410 - -
Ssu8g0694 410 Gene3D CRIB domain 63 97 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0694 Ssu-Chr8 11405516 11409090 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0694 - K20642 gmx:100776004 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0694 8 11405516 11409090 Ssu8g0694 8 11405516 11409090 ECH
Ssu8g0694 8 11405516 11409090 Ssu3g2340 3 74265142 74267948 PCT