Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2340 ATGGAGATTGGCTGGCCCACTAACGTGCGCCATGTCGCGCACGTCACCTTCGACCGGTTCAATGGTTTCTTGGGCCTGCCCGTTGAGTTCGAGCCCGAAGTCTCCACAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACACCAGAGGGAACAGTGTGCCAACCATACTGCTATTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGGGGATGGGTCCCAGAAGATGTTGATATACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAACTGCCTACTGCTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACCGAAGAGGATTGTGCTGAACTGGCAAGGCAGCTACCTCACACCGAAGCTTCCCTCTTGGACTGGGCTATCAATCTGATGGCTGATGTGGTCCAAGAAGAACACCTGAATAAGATGAATGCACGCAACATTGCCATGGTTTTTGCACCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTGAAGACACTTATATTAAGGACACTGCGAGAAAGAAAGGATTGCGTGGTAGAATCGTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAATGGGGACCGCAGTCTTTTGGAGTCCTGCCAGCAAGATGATGTTGCCACTGAAAATGAGCAAGAGGCTGGGGAAACCTTTGTTTCTGAGAAAACTGTATTAGAATGTTCCCCTGAGTCcctccaaaaccaaaattcaactGAAGGAGAATGTGGCAGTTTGATAAGCTCTTCTGAGAATCTGGTTTGTGAGGAGGAATTGTATTGTGAGTTTCCACCCAAAGGAAACATGGGGAAGAGTAAGAGTGGTCAATCAAGTAATTCCAGTGTTAAAAAGGGGTCCAAAAAAACCGGAGGCCTGCAACCTGTGATCCACGCAACAGTGGCTGTTGAGAAAAAAGGTATTAGCAATCTGAGCCGAATAGATTCAAGATCAGAGCGGATAGAAGCCTGGCGGTGA 1137 0.4556 MEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVSTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNRGWVPEDVDIHCLAGLIKAWFRELPTAVLDSLSPEHVMQCQTEEDCAELARQLPHTEASLLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLILRTLRERKDCVVESSPGFCLEPSDENGDRSLLESCQQDDVATENEQEAGETFVSEKTVLECSPESLQNQNSTEGECGSLISSSENLVCEEELYCEFPPKGNMGKSKSGQSSNSSVKKGSKKTGGLQPVIHATVAVEKKGISNLSRIDSRSERIEAWR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2340 378 CDD RhoGAP 65 221 - -
Ssu3g2340 378 PANTHER MKIAA1688 PROTEIN 1 378 IPR044785 GO:0005096
Ssu3g2340 378 SMART PBD_5 3 37 IPR000095 -
Ssu3g2340 378 MobiDBLite consensus disorder prediction 324 341 - -
Ssu3g2340 378 ProSiteProfiles CRIB domain profile. 3 16 IPR000095 -
Ssu3g2340 378 Pfam RhoGAP domain 65 199 IPR000198 GO:0007165
Ssu3g2340 378 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 378 - -
Ssu3g2340 378 Gene3D Rho GTPase activation protein 35 230 IPR008936 GO:0007165
Ssu3g2340 378 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 GO:0007165
Ssu3g2340 378 MobiDBLite consensus disorder prediction 320 349 - -
Ssu3g2340 378 CDD CRIB 1 41 - -
Ssu3g2340 378 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 229 IPR000198 GO:0007165
Ssu3g2340 378 Gene3D CRIB domain 1 34 IPR036936 -
Ssu3g2340 378 Pfam P21-Rho-binding domain 2 29 IPR000095 -
Ssu3g2340 378 SMART RhoGAP_3 62 225 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2340 Ssu-Chr3 74265142 74267948 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2340 - K20642 ccaj:109798318 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2340 3 74265142 74267948 Ssu3g2340 3 74265142 74267948 ECH
Ssu8g0694 8 11405516 11409090 Ssu3g2340 3 74265142 74267948 PCT