Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0674 ATGGAGGTAGGAAGTGTTCTTGACTTCCTTCAGGACAAGACCATTTTAATTGCTGGAGCCACTGGCTTTCTAGCCAAAATTTTTCTGGAGAAGATATTGAGGGTTCAACCCAATGTTAAGaagctttttcttcttttaagagCTTCGGATGCCAAATCTGCTAATTATCGCTTGCAAAATGAGATCATAGCGAAGGACTTGTTTAATGTGCTAAAGGAAAATTTGGGTTCAAATTTTAAGTCCTTTATTTCGGAAAAGTTGACTCTGGTGCCGGGGGACATTTCTTACGAGGACTTGGGTTTGAACGATTCCATTCTAAGGGAAGAGATTTGCAATCAGACAGATGTTATTGTCAATTTAGCAGCAACTACTAACTTTGATGAAAGGTACGATATAGCGTTGGGTCTAAATACCTTTGGAGTTAAGCATGTCATGAACTTCGCTAAACAATGTACTAAACTCAAAGTGCTTGTCCATGTATCAACAGCTTATGTATGTGGTGAGAAAGGTGGACTCATACTAGAGGACCCCTATCACTTTGGTGATTCCCTGAATGGAGTGTCCGGACTAGACATCGATGCAGAAAAGACAATAGTGTGCAACAAATTGGATGAGCTACGAGAGCAGGGGGCCACAGAGCGTGAAATTAAAATAGCCATGAAGAACCTGGGTATTAGCAGGGCAAAGGTGTATGGATGGCCAAACACATACGTATTTACGAAGGCAGTAGGAGAGATGCTTGTGGAACAATTGAAAGGAAGCCTATCCGTTGTTATTATGCGTCCTGCCATCGTTACAAGCACATTAAGAGAACCTTTCCCTGGTTGGGTTGAGGGTATAAgAACCATTGACAGCTTAGCAGTGGCTTATGGGCAAGGAAAATTAACATGCTTCCTTGGAGATATCAACGGAGTTGTGGATGTGGTACCAGCTGACATGGTGGTGAATGCAATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATCATATATCATGTGGGTTCCTCTTTTAGAAATCCACTCACATACTTAAATCTCCAAGACTAtggattaaaatatttcaaggcAACACCATGGATAAACAAGGATGGAACACCGGTCAAGGTTGGCAGAGTAACCGTATTGACCGACATGGATAGCTTCCAGAGATATATGTACATTCGCTACCTGCTTCCATTAAAGGGACTTGAGCTGGCCAATACTGCACTTTGCCAGTATTTTAGGGGAATGTATCTTGAGCTCCACAGGAAGATCCAGGTTGTGATGCGGATGGTTGAACTTTACAGGCCTTACATGTTCTTCGATGGCGTATTTGATGATATGAACACGGAGAAATTGAGAATGGCAGCAAGACAAAGTGGGACAGAGACAGATTTGTTTTACTTTGATACGAAAGAGGTTAATTGGGAGGATTACTTTATGAAGACCCATCTCCCCGGTATTGTCAAATACATTTTCAAGTGA 1473 0.4121 MEVGSVLDFLQDKTILIAGATGFLAKIFLEKILRVQPNVKKLFLLLRASDAKSANYRLQNEIIAKDLFNVLKENLGSNFKSFISEKLTLVPGDISYEDLGLNDSILREEICNQTDVIVNLAATTNFDERYDIALGLNTFGVKHVMNFAKQCTKLKVLVHVSTAYVCGEKGGLILEDPYHFGDSLNGVSGLDIDAEKTIVCNKLDELREQGATEREIKIAMKNLGISRAKVYGWPNTYVFTKAVGEMLVEQLKGSLSVVIMRPAIVTSTLREPFPGWVEGIRTIDSLAVAYGQGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSFRNPLTYLNLQDYGLKYFKATPWINKDGTPVKVGRVTVLTDMDSFQRYMYIRYLLPLKGLELANTALCQYFRGMYLELHRKIQVVMRMVELYRPYMFFDGVFDDMNTEKLRMAARQSGTETDLFYFDTKEVNWEDYFMKTHLPGIVKYIFK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0674 490 CDD FAR-N_SDR_e 13 361 - -
Ssu8g0674 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 338 IPR036291 -
Ssu8g0674 490 Pfam Male sterility protein 17 318 IPR013120 -
Ssu8g0674 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 489 IPR026055 GO:0080019
Ssu8g0674 490 CDD FAR_C 390 489 IPR033640 -
Ssu8g0674 490 PANTHER FATTY ACYL-COA REDUCTASE 2 489 - -
Ssu8g0674 490 Pfam Male sterility protein 391 490 IPR033640 -
Ssu8g0674 490 Gene3D - 8 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0674 Ssu-Chr8 11072570 11079747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0674 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 58.421 7.25e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0674 K13356 - gmx:100805776 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0674 8 11072570 11079747 Ssu8g0674 8 11072570 11079747 ECH
Ssu8g0674 8 11072570 11079747 Ssu3g2366 3 74613931 74651765 PCT