Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2366 ATGGAGTTAGGGAGCATACTCCACTTCCTTCAAGACAAGACCATTTTAGTCACTGGAGCCACTGGCTTTCTCGCCAAAGTTTTGTTGGAGAAGATATTGAGGGTCCAACCAAATATTAAGAAGCTTTACCTTCTTTTAAGAGCTGCAGATGCCAAATCTGCTACTCATCGCTTGCACAATGAGATCGTAGGGAAGGATTTGTTTAGGTTGGTAAAGGAAAAATTGGGTGcaaattttaattcctttgtCTCGAAAAAGTTGACTCTGGTGCCTGGGGACATTTCTCGTGAAGACTTGGGATTGGAGGATCCCATTCTGAGGGAAGAGATTTGCAATCAAACAGATGTCATTATTAATTTAGCTGCAACAACCAATTTTGATGAAAGGTATGATATATCGTTGGGCCTGAATACCTTCGGTGTTAAGTATGTCATCAACTTCGCCAAAAAATGTACTAAACTCGAGGTTCTTGTGCACGTATCAACAGCCTATGTATGTGGTGAGGGAGAAGGACTCATACTAGAGAAACCATATCACTTGGGCGAATCACTGAATGGAATGCGTGGATTAGACAtctatgaagaagaaaaagttgtgcGTGACAAATTGAGTGAGCTACGACAGTTGGGAGCCTCAGAAAGTGAAACTAAAGAGGTTATGAAGGACTTGGGCATTGGCAGGGCAAAATTGTATGGATGGCCAAACACATATGTATTCACCAAGGCGATGGGAGAAATGCTTGTGGAACAACTAAAAGGAAACTTGTCCGTTGTGATCATTCGTCCTACCATTGTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGAACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCTGAAAGCAATTGTTGATGCGGTGAGGTTCTGCATGAAGCCCTTTATATGCCTTATTGTGATTGATTTCTCCCTTTTTCTGATATCATCCGAATACCACCAATTTAATAAGCAGATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCCATGGTGGCTCATGCACATCATCCTAGTGATGATGTTATATATCATGTTAGTTCGTCTGTTAGAAGACCACTAAGATACAGCAATCTTCAAGACTATGGCTTAAGATATTTCACAGCAAAACCATGGATAAACAAGGATGGAAGACCAGTTAAGGTTGGCAAAGTTACAGTATTGAGCAACATGGATAGCTTCAGAAGATATATGTTCATTCGCTACCTGATTGTGCTAAAGgGACTTGAGCTGGCCAATATTGCATTTTGCCAGTATTTCCAAGGAGCATATCTTGATCTCAATAGGAAGATCCAGATTGTGATGCGGTTGGTGGACCTTTACAAGCCTTACTTGTTCTTCAAAGCTGCATTTGATGATATGAACACAGAGAAGTTGCGAATGGCAGCAAGACAAGGTGGCGTGGAGACTGATTTGTTTTACTTTGACCCCAAACTGATTGATTGGGAAGATTACTTTTTGAATATCCACTTCCCTGGTGTGGTGAAGTACATTTTCAAGTGA 1569 0.4041 MELGSILHFLQDKTILVTGATGFLAKVLLEKILRVQPNIKKLYLLLRAADAKSATHRLHNEIVGKDLFRLVKEKLGANFNSFVSKKLTLVPGDISREDLGLEDPILREEICNQTDVIINLAATTNFDERYDISLGLNTFGVKYVINFAKKCTKLEVLVHVSTAYVCGEGEGLILEKPYHLGESLNGMRGLDIYEEEKVVRDKLSELRQLGASESETKEVMKDLGIGRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSVVIIRPTIVTSTFKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAIVDAVRFCMKPFICLIVIDFSLFLISSEYHQFNKQIPADMVVNAILVAMVAHAHHPSDDVIYHVSSSVRRPLRYSNLQDYGLRYFTAKPWINKDGRPVKVGKVTVLSNMDSFRRYMFIRYLIVLKGLELANIAFCQYFQGAYLDLNRKIQIVMRLVDLYKPYLFFKAAFDDMNTEKLRMAARQGGVETDLFYFDPKLIDWEDYFLNIHFPGVVKYIFK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2366 522 Pfam Male sterility protein 424 522 IPR033640 -
Ssu3g2366 522 CDD FAR-N_SDR_e 13 393 - -
Ssu3g2366 522 Gene3D - 8 403 - -
Ssu3g2366 522 Pfam Male sterility protein 17 309 IPR013120 -
Ssu3g2366 522 CDD FAR_C 422 521 IPR033640 -
Ssu3g2366 522 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 313 IPR036291 -
Ssu3g2366 522 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 313 IPR026055 GO:0080019
Ssu3g2366 522 PANTHER MALE STERILITY PROTEIN 2-RELATED 338 521 IPR026055 GO:0080019
Ssu3g2366 522 PANTHER FATTY ACYL-COA REDUCTASE 2 313 - -
Ssu3g2366 522 PANTHER FATTY ACYL-COA REDUCTASE 338 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2366 Ssu-Chr3 74613931 74651765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2366 110 521 Acyl Lipid Metabolism Gene Families AT4G33790 56.553 9.32e-174 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2366 K13356 - gmx:100798338 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0674 8 11072570 11079747 Ssu3g2366 3 74613931 74651765 PCT