Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0663 ATGGGGGAATTCAAACATTTCGTAACTGTTAAGTTCAAGGAAGGTGTGGTAGTTGAAGAGCTCACAAAAGGGATGGAGAAGTTGGTCTCTGAGATTGATGCTGTCAAGTCCTTTGAATGtCTTTTTGGAGGGATCATatggaattttaatttattggatTTAGCTTTAATACGGATATTCTCATGTACTTTACCAGTAGGGTCTTATCATATGCTTGCATTTATATTGAATAAGGGACAGGACATTGAAAGCCTAGATGTGTTGAGACGAGGTTTCACTCATGCCTTCTTGATGACATTCAACAAGAAAAAGGACTTCGTTCCATTTCAGAGCCACCCAAATCATGTTGAGTTCTCGACAACATTTTCAGTAGCTATTGAGAATGTTGTGCTGTTGGATTTCCCATCTACTCTTGTCAAGGCCCCAAGCATGATCCTAAAGATTTTCCAGCAATAA 456 0.3794 MGEFKHFVTVKFKEGVVVEELTKGMEKLVSEIDAVKSFECLFGGIIWNFNLLDLALIRIFSCTLPVGSYHMLAFILNKGQDIESLDVLRRGFTHAFLMTFNKKKDFVPFQSHPNHVEFSTTFSVAIENVVLLDFPSTLVKAPSMILKIFQQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0663 151 SUPERFAMILY Dimeric alpha+beta barrel 78 136 IPR011008 -
Ssu8g0663 151 Pfam Stress responsive A/B Barrel Domain 87 135 IPR013097 -
Ssu8g0663 151 Gene3D - 2 146 - -
Ssu8g0663 151 PANTHER - 1 39 IPR044662 -
Ssu8g0663 151 PANTHER EXPRESSED PROTEIN 76 143 - -
Ssu8g0663 151 PANTHER - 76 143 IPR044662 -
Ssu8g0663 151 ProSiteProfiles Stress-response A/B barrel domain profile. 4 134 IPR013097 -
Ssu8g0663 151 PANTHER EXPRESSED PROTEIN 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0663 Ssu-Chr8 10969367 10969945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0663 - - pvu:PHAVU_005G126400g 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0663 8 10969367 10969945 Ssu8g0663 8 10969367 10969945 ECH
Ssu8g0663 8 10969367 10969945 Ssu3g2383 3 75034285 75035194 PCT