Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2383 ATGACCCCAAGGGTGTGTCCTTCATGTGCAACGACAATTGCACCAGACAATGTTTACTGTGCTAATGTGGAGAAGAAGTTGCACCCTGGTGGGTCTGTATATGAAACTGTAGTAGCCATGGGGACTTTCAATCACTTTGTGATTCTTAAGTTCAAGGATGGTGTGGCAGTTGAAGAACTCATTCAAGGGTTGGAGAAAATGGTCTCTGGGATTGAGCATGTCAAGTCCTTTGAATGGGGAAAGGACATTGAAAGTCATGATATGCTGAGACAAGGTTTCACTCATGCTTTCTTGATGACATTCAATGGGAAAGAGGAGTTCAACGCATTTCAGACACACCCAATTCATGTTGAGTTCTCGGGAGTGCTTTCACCTGTTATTGAGAAGATTGTGGTGCTGGATTTCCCATCTAACCTTGTCAAAGCACCAGCATGA 435 0.4391 MTPRVCPSCATTIAPDNVYCANVEKKLHPGGSVYETVVAMGTFNHFVILKFKDGVAVEELIQGLEKMVSGIEHVKSFEWGKDIESHDMLRQGFTHAFLMTFNGKEEFNAFQTHPIHVEFSGVLSPVIEKIVVLDFPSNLVKAPA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2383 144 PANTHER - 40 143 IPR044662 -
Ssu3g2383 144 PANTHER EXPRESSED PROTEIN 40 143 - -
Ssu3g2383 144 SMART Dabb_2 43 137 IPR013097 -
Ssu3g2383 144 SUPERFAMILY Dimeric alpha+beta barrel 40 137 IPR011008 -
Ssu3g2383 144 Pfam Stress responsive A/B Barrel Domain 44 136 IPR013097 -
Ssu3g2383 144 Gene3D - 39 144 - -
Ssu3g2383 144 ProSiteProfiles Stress-response A/B barrel domain profile. 43 135 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2383 Ssu-Chr3 75034285 75035194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2383 - - gmx:100306003 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2383 3 75034285 75035194 Ssu3g2383 3 75034285 75035194 ECH
Ssu8g0663 8 10969367 10969945 Ssu3g2383 3 75034285 75035194 PCT