Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0652 ATGGACGAGGCGAGTCCCAAAATTTTCATTCCAAACACGATCGAGGGAGTGAGTAACCACGTGACCGGGCAGATTCAACTGCTTTGGGAATTGGTGAAGGCGCCACTGATAGTGCCTCTGCTGAAACTCGGAGTGTACATTTGTCTCGCAATGTCGCTCATGCTCTTCATGGAGAGGCTCTACATGGGGGTTGTCATCGTCCTCGTTAAACTCTTCTGGAAGAAACCGGAACAGCGTTACGACTACAAGCCCCTCCAAGACGACGTCGAATTGGGCTCCTCTCATTTCCCCACGGTCCTCGTGCAAATCCCAATGTTCAACGAAAGAGAGGTTTACAAGGTGTCCATTGGAGCTGCTTGTGGGCTTTCGTGGCCCGCTGACCGTCTCGTTATCCAAGTCCTCGATGATTCTACTGACCCTGTCGTTAAGGAAATGGTGGAACAAGAGTGTCTGAGATGGGCGAGTAAAGGCATAAACATAACGTACCAAATAAGGGAGAACAGAACGGGTTATAAAGCGGGTGCGCTGAAAGAAGGCCTGAAACGAAGCTATGTGAAGCACTGCGAGTACGTGGCCATTTTCGACGCGGATTTCAGGCCTGAGCCAGATTTTCTCAGGCGAGCAATTCCCTTCTTGGTTGGTAACCCTGAGCTTGCTTTGGTTCAAGCCCGCTGGAGATTTGTGAATGCGGATGAGTGCTTGTTAACAAGAATGCAAGAGATGTCACTGGATTATCATTTCACAGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAATGGGACAGCGGGTATTTGGAGAATTGCTGCTATCAACGAAGCTGGAGGGTGGAAAGACAGGACAACGGTGGAGGACATGGATCTTGCTGTTCGTGCCAGTCTTAGGGGCTGGAGATTTTTGTACCTTGGAGACCTCCAGGCGAAAAGTGAGCTTCCCAGTACTCTTAGAGCCTTCCGCTTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAATCTATTCCGCAAAATGGTGATGGAGATAGTAAGGAACAAGAAAgtaaaattttggaagaaagtatatgttatATACAGCTTCTTCTTTGTTCGTAAAATCATAGCTCATATGGTCACATTCTTCTTCTACTGTGTTGTGCTTCCCTTAACAATTTTGGTCCCTGAGGTTCATGTTCCAATTTGGGGAGCTGTTTATATTCCTTCCATAATCACCACCCTCAATTCAGTTGGTACACCAAGGTCCATTCACCTGTTGTTCTACTGGATCCTTTTTGAGAATGTAATGTCATTGCACCGTACAAAGGCAACCTTCATAGGTCTGCTAGAAGCGGGGAGAGCCAATGAGTGGGTTGTCACTGAGAAACTTGGAGACTCTGTCAATAATAAGAGTAAAGCAGGAGATGCTGCCAAGAACAAGATCAATGTCACCAAAGCAATCAGAAAAACTCGATTCAAATTTGGTGAAAGACTTCATTTATTGGAGCTTGGATTTGCTGCCTTCCTATTCTTCTGTGGTTGCTATGATTTCGTGCACGGCAAGAACAATTACTTTGTGTACCTCTTCCTTCAGACCATAACCTTCTCAATCGTAGGATTTGGCTATGTTGGCACCATTGTCTAG 1626 0.46 MDEASPKIFIPNTIEGVSNHVTGQIQLLWELVKAPLIVPLLKLGVYICLAMSLMLFMERLYMGVVIVLVKLFWKKPEQRYDYKPLQDDVELGSSHFPTVLVQIPMFNEREVYKVSIGAACGLSWPADRLVIQVLDDSTDPVVKEMVEQECLRWASKGINITYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLVGNPELALVQARWRFVNADECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWRFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVLPLTILVPEVHVPIWGAVYIPSIITTLNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEAGRANEWVVTEKLGDSVNNKSKAGDAAKNKINVTKAIRKTRFKFGERLHLLELGFAAFLFFCGCYDFVHGKNNYFVYLFLQTITFSIVGFGYVGTIV 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0652 541 SUPERFAMILY Nucleotide-diphospho-sugar transferases 92 378 IPR029044 -
Ssu8g0652 541 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 88 316 IPR029044 -
Ssu8g0652 541 Pfam Glycosyl transferase family group 2 190 399 IPR001173 -
Ssu8g0652 541 PANTHER BNAC09G36340D PROTEIN 1 541 - -
Ssu8g0652 541 CDD CESA_CaSu_A2 97 333 - -
Ssu8g0652 541 PANTHER - 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0652 Ssu-Chr8 10731353 10736466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0652 1 541 Miscellaneous Gene Families AT5G22740 81.215 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0652 K13680 - gmx:100788761 1024.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0652 8 10731353 10736466 Ssu8g0652 8 10731353 10736466 ECH
Ssu8g0652 8 10731353 10736466 Ssu3g2398 3 75235212 75240131 ECH