Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2398 ATGGTCGAATCTCAGCCCAAGTTCTTCATCCCGGATTCAATCCAGGGCGTGAATATCGACGTGGCCGCGCAGATTAGAATGGTGTGGGAAGTGATCAAAGCGCCACTGATCGTGCCTCTGCTCAACGTTGGCGTCTACATTTCCCTCGCAATGGCCCTCATGTTGTTCATGGAGAGGGTCTACATGGGCATTGTCATCATCCTCGTGAAACTCTTCTGGAAGAAGCCCCACCAGCGCTACAAGTTCGAGCCCCTCCAAGAGGACGAGGAACTCGGAAACACTAACTTCCCCGTCGTTCTTGTCCAGATTCCAATGTTCAATGAAAAGGAGGTGTACAAGGTGTCCATTGGAGCAGCTTGTAATCTTTCGTGGCCTGCGGACCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGCAAATGGTGGAAGTGGAATGCCAGAGATGGGCTAGCAAGGGCATAAACATAGTGTACCAAATCAGGGAAACCAGAGGGGGGTACAAAGCGGGTGCTCTAAAAGAAGGCCTAAAACGTAACTACGTGAAACACTGCGAGTACGTGGCAATTTTTGATGCAGATTTCCGGCCAGAGCCAGACTTTCTGAGGCGTTCCATTCCTTTCTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTCGTGAATGCTAATGAGTGTATATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTCGGTTTCAACgGAACTGCTGGTGTTTGGAGAATAGCTGCTATCAATGAAGCAGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCTAAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGGCGAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACCGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATAGTGAGGAACAAgAAAGTTAAGTTTTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTCCGTAAAATCATAGCCCACATGGTCACATTCTTCTTCTACTGTGTGGTAATTCCCCTTACAATTTTGATCCCTGAGGTTCATGTTCCAATATGGGGAGCTGTTTATATTCCTTCCGTCATCACCATTCTCAATTCAGTTGGAACACCAAGGTCCATTCACCTTCTCTTCTATTGGATCCTTTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTGTTAGAATATGGAAGGGCCAATGAATGGGTTGTAACTGAAAAGCTTGGTGACTCTgtcaacaataataagaataaatcaGCAGATGCTGCCAAGAAGAATAATGTCATCAAGGCCCCCCCCAAAAAGACTCGATCTAAATTTGTTGAAAGACTTAATTTACTGGAGCTGGGATTTGCGGCCTTCCTCTTCTTATGTGGATGCTATGATTTTGTGCACGGGAAACACAACTACTTTATCTACCTCTTCCTTCAGACCATAACCTTCACAATTGTAGGATTTGGCTATGTTGGCACCATCGTGTAA 1629 0.4549 MVESQPKFFIPDSIQGVNIDVAAQIRMVWEVIKAPLIVPLLNVGVYISLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFEPLQEDEELGNTNFPVVLVQIPMFNEKEVYKVSIGAACNLSWPADRLVIQVLDDSTDPTIKQMVEVECQRWASKGINIVYQIRETRGGYKAGALKEGLKRNYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNANECILTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILIPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNNNKNKSADAAKKNNVIKAPPKKTRSKFVERLNLLELGFAAFLFLCGCYDFVHGKHNYFIYLFLQTITFTIVGFGYVGTIV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2398 542 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 377 IPR029044 -
Ssu3g2398 542 PANTHER BNAC09G36340D PROTEIN 5 542 - -
Ssu3g2398 542 PANTHER - 5 542 - -
Ssu3g2398 542 Pfam Glycosyl transferase family group 2 190 389 IPR001173 -
Ssu3g2398 542 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 316 IPR029044 -
Ssu3g2398 542 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2398 Ssu-Chr3 75235212 75240131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2398 5 542 Miscellaneous Gene Families AT5G22740 80.334 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2398 K13680 - gmx:100802752 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2398 3 75235212 75240131 Ssu3g2398 3 75235212 75240131 ECH
Ssu8g0652 8 10731353 10736466 Ssu3g2398 3 75235212 75240131 ECH