Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0644 ATGGCTTCGGCGCGAGTAGATCTGGATGGGAACCCCATAAAGCCAATCACCATTTGCATGATAGGCGCTGGGGGCTTCATCGGTTCCCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAAGGTCCTCGCCTTGGATGTGTACAATGACAAGATCAAACACCTGTTGGAACCCGACACGCTCCCTTGGGCCGGTCGCATCCAATTCCACCGACTCAACATCAAGCACGATTCCAGACTCGAGGGTCTCATCAAGATCGCAGATCTGACCATTAATCTCGCTGCTATATGCACTCCCGCGGATTACAACACGCGCCCTTTGGACACCATTTACAGCAACTTCATCGACGCGCTTCCCGTGGTGAAGTACTGTTCGGAAAACAACAAGCGTCTCATTCATTTTTCTACGTGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGCGCTCTTCGTCAGGATCCTACATACTATGTTCTGAAAGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGAGCTGAAAATGGCTTGGAATTCACAATTGTGAGACCTTTTAATTGGATTGGACCTAGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTACCTCGGGTTCTGGCGTGCTTTAGCAATAATCTCCTCCGCCGAGAGCCCCTCAAGCTTGTGGATGGTGGTCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCCGCAAGGGCCAATGGGCAGATTTTTAACGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCATCTCTAGAAAAACCTACTGTTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAGCTTGGCTGGGATCCTAAAACCTCACTTTGGGACCTGCTTGAATCCACTCTCACCTATCAGCACAGGACTTATGCTGAAGCCATTAAGAAAGTCATTGCAAAGCCCGTGGCGAGTTAA 1164 0.4691 MASARVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETPHKVLALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPTYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEASLEKPTVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWDPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0644 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Ssu8g0644 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 386 - -
Ssu8g0644 387 Gene3D - 16 378 - -
Ssu8g0644 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Ssu8g0644 387 PANTHER - 4 386 - -
Ssu8g0644 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0644 Ssu-Chr8 10573976 10576250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0644 16 382 Miscellaneous Gene Families AT1G02000 21.337 2.75e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0644 K12449 - gmx:100792879 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0644 8 10573976 10576250 Ssu8g0644 8 10573976 10576250 ECH
Ssu8g0644 8 10573976 10576250 Ssu3g2406 3 75391468 75393856 PCT