Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2406 ATGGCGCGAGTGGATCTGGACGGGAACCCCATCAAGCCACTCACGATCTGCATGATCGGCGCGGGCGGGTTCATCGGCTCGCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAAGGTCCTCGCCTTGGACGTGTACAACGACAAGATCAAGCACCTTCTCGAACCCGATTCTCTTCCCTGGGCCGGTCGCATCACCTTCCACCGCCTCAACATCAAACACGATTCCCGTCTCGAAGGCCTCATCAAGATGGCAGATCTCACGATAAATCTGGCTGCAATTTGCACTCCGGCGGATTACAACACGCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGGTGAAATACTGCTCGGAAAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTCCTCTTCGTAAGGATCCGGCATACTATGTTCTTAAAGAAGATGAGTCTCCTTGCATTTTTGGTCCAATTGAAAAGCAGAGGTGGTCTTATGCCTGTGCAAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGACTTGGAGTTCACAATTGTGAGGCCTTTCAATTGGATTGGACCTCGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTCGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCCAATGGTCAAATATTTAATGTGGGTAACCCAAGCAATGAGGTTACTGTTAGGCAGCTTGCAGAAATAATGATCCAGGTTTACTCAAAGGTAAGTGGAGAACAACCTCCCGAAACACCTACAATTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATAAACAGGCAGCTTGGATGGAATCCTAAGACTTCGCTTTGGGACCTGCTTGAATCCACTCTGACCTATCAGCACAGGACATATGCTGAAGCCATTAAGAAAGTCATTGCAAAACCCGTTGCAAGTTAA 1158 0.475 MARVDLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYNDKIKHLLEPDSLPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRKDPAYYVLKEDESPCIFGPIEKQRWSYACAKQLIERLIYAEGAENDLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPSNEVTVRQLAEIMIQVYSKVSGEQPPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2406 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 368 IPR036291 -
Ssu3g2406 385 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 1 384 - -
Ssu3g2406 385 Pfam NAD dependent epimerase/dehydratase family 16 286 IPR001509 -
Ssu3g2406 385 Gene3D - 14 376 - -
Ssu3g2406 385 PANTHER - 1 384 - -
Ssu3g2406 385 CDD Arna_like_SDR_e 15 370 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2406 Ssu-Chr3 75391468 75393856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2406 14 380 Miscellaneous Gene Families AT1G02000 21.429 6.05e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2406 K12449 - gmx:102667779 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2406 3 75391468 75393856 Ssu3g2406 3 75391468 75393856 ECH
Ssu8g0644 8 10573976 10576250 Ssu3g2406 3 75391468 75393856 PCT