Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0637 ATGACGGCGGCTGCTTTTGCCATCTCCGTCGCGTTGTTAGCGGCGGCGGTTGATTTTGGATCGGCGGCGAGTCTGACGCTGGAGAGAGCGTTTCCGACGAATCATGGAGTGGAGTTGAGTCAGCTGAGAGCTCGCGACATGGCGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTCGATTTCCCCGTTCAAGGCACCTTTGATCCCTTCCAAGTCGGGCTCTACTATACAAAGGTGCAGTTGGGTACTCCTCCAGTAGAATTTAATGTGCAGATTGACACCGGCAGTGATGTTCTCTGGGTTAGTTGTACCTCCTGCAATGGTTGTCCTCAAACAAGTGGGCTCCAGATTcagctcaatttttttaaccccGGGAGTTCGTCAACATCTTCATCGATCTCTTGCTCTGACCAAAGGTGCAAAAATGGAATACAATCATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCCTACACTTTCCAGTATGGAGATGGGAGTGGGACATCGGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGATCCGTGACCACGAATTCTACAGCGCCTGTAGTTTTTGGTTGTAGCAACCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTCTCCTCACAAGGGATTGCTCCAAGAGTATTCTCCCATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTACACTTCACTTGTTGCAGCACAGCCTCATTACAATTTAAATCTACAGAGCATCTCTGTCAACGGCCAGGCATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGACTCTGGAACAACTTTGGCGTACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCACAAACTGTACGCACTGTTGTTTCCAAGGGGAATCAGTGTTACTTAATCACTGCCAGTGTCACTGACATTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGACCACAAGACTACCTGATACAGCAGAATTCTATTGGTGGTGCAGCGGTGTGGTGTATTGGCTTTCAGGAAATCCAGGGTCAAGGGGTAACAATTCTAGGAGATCTcgtattaaaagacaaaattgttGTTTATGATCTGGCTGGTCAACGCATTGGATGGGTTAACTATGACTgTTCTTTGTCTGTGAATGTCTCTGCAACAACTGGCACTGGCAGAAGTGAATACGTGAATGCTGGAGAGATAGGTGGAAGCACTTCTTTACGTGATGGACTTAAGTTGAGAAAGACAGGGTTCTTGGCTTTCTTTGTGCATCTAACACTAATTTACTGCTTTGGATTCTTATAG 1479 0.449 MTAAAFAISVALLAAAVDFGSAASLTLERAFPTNHGVELSQLRARDMARHRRMLQSSNGVVDFPVQGTFDPFQVGLYYTKVQLGTPPVEFNVQIDTGSDVLWVSCTSCNGCPQTSGLQIQLNFFNPGSSSTSSSISCSDQRCKNGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVAAQPHYNLNLQSISVNGQALQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQTVRTVVSKGNQCYLITASVTDIFPQVSLNFAGGASMILRPQDYLIQQNSIGGAAVWCIGFQEIQGQGVTILGDLVLKDKIVVYDLAGQRIGWVNYDCSLSVNVSATTGTGRSEYVNAGEIGGSTSLRDGLKLRKTGFLAFFVHLTLIYCFGFL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0637 492 Gene3D Acid Proteases 264 443 IPR021109 -
Ssu8g0637 492 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Ssu8g0637 492 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 453 - -
Ssu8g0637 492 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Ssu8g0637 492 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Ssu8g0637 492 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Ssu8g0637 492 CDD pepsin_A_like_plant 77 436 IPR034161 -
Ssu8g0637 492 Pfam Xylanase inhibitor C-terminal 280 431 IPR032799 -
Ssu8g0637 492 PANTHER ASPARTYL PROTEASES 4 453 IPR001461 GO:0004190|GO:0006508
Ssu8g0637 492 SUPERFAMILY Acid proteases 72 439 IPR021109 -
Ssu8g0637 492 ProSiteProfiles Peptidase family A1 domain profile. 77 432 IPR033121 -
Ssu8g0637 492 Gene3D Acid Proteases 51 263 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0637 Ssu-Chr8 10509696 10514196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0637 51 437 Miscellaneous Gene Families AT1G44130 27.363 3.08e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0637 - K00924 gmx:100791299 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0637 8 10509696 10514196 Ssu8g0637 8 10509696 10514196 ECH
Ssu8g0637 8 10509696 10514196 Ssu3g2413 3 75519695 75524188 PCT