Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2413 ATGGACGCGGTGGCCGCTGCTTTTTTCTTCGCCGCCGCGCTTCTGTCGGCGGTTTCCGGGTCTCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAGTTGAGTCAGCTCAGAGCATGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTTACTACGTTGTAGATTTCCCTGTTAAAGGCACCTTCGATCCCTCACAAATCGGGCTTTACTTTACAAGGGTGAAATTGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGAAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAATGGTTGTCCTCAGACAAGTGGGCTccaaATTCAGCTCAATTACTTTGACCCTGGGAGTTCATCAACATCTTCATTGATCTCTTGTTCGGACCGAAGGTGCAGGAATGGAGTACAGTCATCGGATGCAAGCTGTTCCGGTCAGAACAACCAGTGCACTTACACATTCCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTGTCAGATTTGATGCATTTTGCTAGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCAACCTGCAGACTGGGGACTTAACAAAGTCTGATAGAGCAATTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCTGTCGTCTCTCAACTCTCATCGCAAGGAATAGCATCAAGAGTGTTCTCCCATTGCCTGAGAGGAGATAATAGTGGTGGGGGCATATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCCCTTGTTCCATCGCAGCCCCATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTTTGCCAATTGATCCTGCAGTTTTTGCTACATCAAATAACAGAGGTACCATTGTTGATTCCGGAACAACCTTGGCATACCTTGCAGAAGAGGCATACAATCCCTTTGTCAATGCGATTACAGCTGCTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAACTCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCGCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATTCAGCAGAATTATATTGGCCAGGGATCAGTGTGGTGTATTGGCTTTCAGAAAATCCCTGGTCAAAGTGTAACTATTCTAGGAGACCTcgtattaaaagacaaaatttttgTCTACGATCTTGCTGGTCAACGCATTGGGTGGGCTAACTACGATTGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCAGGACAGCTAAGTGGCAGCACTTCTTTACGTGATGGACCTCACATGTTGATAAAGACACTGTTCCTTGCTCTCGTCATGCACATAACACTAATTTTGTAG 1470 0.4503 MDAVAAAFFFAAALLSAVSGSPVTLTLERAFPSNDGVELSQLRAWDSLRHRRMLQSTYYVVDFPVKGTFDPSQIGLYFTRVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPGSSSTSSLISCSDRRCRNGVQSSDASCSGQNNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGTLTTNSSASVVFGCSNLQTGDLTKSDRAIDGIFGFGQQGMSVVSQLSSQGIASRVFSHCLRGDNSGGGILVLGEIVEPNIVYSPLVPSQPHYNLNLQSISVNGQILPIDPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITAAIPQSVRSVLSRGTQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLIQQNYIGQGSVWCIGFQKIPGQSVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGQLSGSTSLRDGPHMLIKTLFLALVMHITLIL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2413 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Ssu3g2413 489 Gene3D Acid Proteases 264 442 IPR021109 -
Ssu3g2413 489 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 454 - -
Ssu3g2413 489 PANTHER ASPARTYL PROTEASES 4 454 IPR001461 GO:0004190|GO:0006508
Ssu3g2413 489 CDD pepsin_A_like_plant 77 437 IPR034161 -
Ssu3g2413 489 Gene3D Acid Proteases 53 263 IPR021109 -
Ssu3g2413 489 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Ssu3g2413 489 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Ssu3g2413 489 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Ssu3g2413 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Ssu3g2413 489 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Ssu3g2413 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2413 Ssu-Chr3 75519695 75524188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2413 51 438 Miscellaneous Gene Families AT1G44130 25.679 1.00e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2413 - K00924 gmx:100811632 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2413 3 75519695 75524188 Ssu3g2413 3 75519695 75524188 ECH
Ssu8g0637 8 10509696 10514196 Ssu3g2413 3 75519695 75524188 PCT