Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0609 ATGGGTCAGAAGCAGACGAAGAAGAGCGACTGTGGGCACAAGAAGGACAAAggaaagaagaaggaggaaaCACCGTCCCCTACCTCAACCACGGTAGTGTTGAAGGTCGACATGCATTGCGATTGCAATGGATGCGCTTCCAAAATCGTCAAATGCGTTCGCGGTTTCCAAGCGTTGAAATTGAACCTTCTTGTTGAAGGCGTGGAGAATGTGAAGGTGGAGAGCGAGACCGGGAAGTTGACCGTCACGGGAAACGTTGACCCAGCCAAACTGAGGGAAAAGCTCGCTCGTAAGATGAAGAAGAATGTCGAACTCATCTCTCCCCTTCccaacaagaacaaggaaaacaAGCCCAAAAACAACGACAAAAAGCCCAAAGACGACAAAGAGGCTCCGGTGACGACGGCGGTGCTGAAGGTGCCGCGGCTTTGCACATGCCAGGGTTGCTTCAGTAGGCTTCGCAAGGCGGTGTCGAAGAGGAAAGGGGTACATGACGTGGCTATAGATATGGAGAAGGGGATGGTGACGGTGAAGGGCACGATGGACGTGAATGCTCTGGCGGGGAAACTGTCGGAGAAGTTTAAGAGGAAGGTTGAGGTGGTCCCTCccaagaaggagaaggagaaggagaaggagaaggaaaaggaaGGTGAGAAAGAGGGTGACAAAGAAGGGAACAATGCCACCgccaagaagaagaaaaagggtgGCGGCGGCGGTGGAGGAGATAACGATAAGGGTGACGAGGGCGGTGGTGATGGCCAGGGGAAAAAGGAGCAGAACATTATCGACTATCCGGTACCCGTGGGTGGTTATGGTTATGGCAATGGTTATGGTTATGCTAACTACATGGGGCAATATCATCCTGTGACGCACATGTTCAGTGAGGAAAATCCCTATGCCTGTCACATTATGTGA 918 0.4662 MGQKQTKKSDCGHKKDKGKKKEETPSPTSTTVVLKVDMHCDCNGCASKIVKCVRGFQALKLNLLVEGVENVKVESETGKLTVTGNVDPAKLREKLARKMKKNVELISPLPNKNKENKPKNNDKKPKDDKEAPVTTAVLKVPRLCTCQGCFSRLRKAVSKRKGVHDVAIDMEKGMVTVKGTMDVNALAGKLSEKFKRKVEVVPPKKEKEKEKEKEKEGEKEGDKEGNNATAKKKKKGGGGGGGDNDKGDEGGGDGQGKKEQNIIDYPVPVGGYGYGNGYGYANYMGQYHPVTHMFSEENPYACHIM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0609 305 MobiDBLite consensus disorder prediction 200 255 - -
Ssu8g0609 305 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 7 305 IPR044594 GO:0046872
Ssu8g0609 305 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g0609 305 MobiDBLite consensus disorder prediction 115 133 - -
Ssu8g0609 305 MobiDBLite consensus disorder prediction 102 134 - -
Ssu8g0609 305 CDD HMA 137 185 IPR006121 GO:0046872
Ssu8g0609 305 Gene3D - 25 113 - -
Ssu8g0609 305 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 7 305 - -
Ssu8g0609 305 ProSiteProfiles Heavy-metal-associated domain profile. 145 177 IPR006121 GO:0046872
Ssu8g0609 305 MobiDBLite consensus disorder prediction 200 261 - -
Ssu8g0609 305 Gene3D - 131 198 - -
Ssu8g0609 305 SUPERFAMILY HMA, heavy metal-associated domain 145 191 IPR036163 GO:0046872
Ssu8g0609 305 SUPERFAMILY HMA, heavy metal-associated domain 28 105 IPR036163 GO:0046872
Ssu8g0609 305 CDD HMA 33 97 IPR006121 GO:0046872
Ssu8g0609 305 MobiDBLite consensus disorder prediction 7 24 - -
Ssu8g0609 305 Pfam Heavy-metal-associated domain 145 197 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0609 Ssu-Chr8 9895300 9896621 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0609 - - vra:111241509 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0609 8 9895300 9896621 Ssu3g2458 3 76338956 76340415 PCT