Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2458 ATGGGCGCGAAAAAGAAGACAGGTGGCGGAAACAGCAACAAGGAGAGCGAAGACAACACCACCACCGTTGTCTTAAAGGTCGACATGCACTGCGACGGCTGCGCTGCCAAAATCATCAAACACCTTCGCGGTTTCCAAGGCGTGGAGATGGTGAAGGCGGAGAGCGACGCCGGGAAGGTAACCGTCACCGGGAAAGTGGACCCCACCAAAGTGAGGGACAACCTGAAGGAGAAGATAAAGAAGAATGTGGAAATCCTCTCTCCGCAGCCCAAGAAGGAGCAGGAGACCAAGGACACCAAACCCAACAACAAATCCAAGAACAAAACCCACGACAAAAAAACCAAAGACAAAGAGGTGGTGACTACCGCGGTTCTGAAGATGGCACTGCATTGCCAGGGATGCGTAGACAGGATTCGCAAGACTCTGTCGAAAATCAAAgGAGTTGAAGGAATGGGCATAGACAAGGAGAAGGAAACAGTGACTGTGAAGGGGACAATGGACGTTAAGGCTCTGGTGGAGAATCTAATGGAGAAGCTTAAGAGGAAGGTTGAGGTGGTCCCTCCCAAGAAAGACAAGGACGGTGAGAACGAAGGATCaggcaagaagaagaacaagggtggtggtggaggaggagATGAGAATGAGCATATTGAAGAGGGAGGAGAGAAAATAGAGCATAACAGAATGGAGTATTTGGCACCTGCTTTTGGCTTTGGTTACGGTTATGGTTATGGGCATGGCAATATTGGTGGTGGCTATAACTACATGCCCGTGTACCCGGAGCAGATGCACTTTCATTTGCATGCACCACCACCACAAATGTTCAGTGATGAGAACCCGAATGCTTGTTCTGTCATGTGA 861 0.4727 MGAKKKTGGGNSNKESEDNTTTVVLKVDMHCDGCAAKIIKHLRGFQGVEMVKAESDAGKVTVTGKVDPTKVRDNLKEKIKKNVEILSPQPKKEQETKDTKPNNKSKNKTHDKKTKDKEVVTTAVLKMALHCQGCVDRIRKTLSKIKGVEGMGIDKEKETVTVKGTMDVKALVENLMEKLKRKVEVVPPKKDKDGENEGSGKKKNKGGGGGGDENEHIEEGGEKIEHNRMEYLAPAFGFGYGYGYGHGNIGGGYNYMPVYPEQMHFHLHAPPPQMFSDENPNACSVM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2458 286 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 5 286 IPR044594 GO:0046872
Ssu3g2458 286 CDD HMA 24 81 IPR006121 GO:0046872
Ssu3g2458 286 Gene3D - 19 94 - -
Ssu3g2458 286 Gene3D - 117 192 - -
Ssu3g2458 286 MobiDBLite consensus disorder prediction 182 217 - -
Ssu3g2458 286 SUPERFAMILY HMA, heavy metal-associated domain 17 81 IPR036163 GO:0046872
Ssu3g2458 286 ProSiteProfiles Heavy-metal-associated domain profile. 121 180 IPR006121 GO:0046872
Ssu3g2458 286 CDD HMA 129 184 IPR006121 GO:0046872
Ssu3g2458 286 SUPERFAMILY HMA, heavy metal-associated domain 120 184 IPR036163 GO:0046872
Ssu3g2458 286 MobiDBLite consensus disorder prediction 82 116 - -
Ssu3g2458 286 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3 5 286 - -
Ssu3g2458 286 Pfam Heavy-metal-associated domain 25 81 IPR006121 GO:0046872
Ssu3g2458 286 Pfam Heavy-metal-associated domain 128 184 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2458 Ssu-Chr3 76338956 76340415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2458 - - gmx:100797817 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2458 3 76338956 76340415 Ssu3g2458 3 76338956 76340415 ECH
Ssu8g0609 8 9895300 9896621 Ssu3g2458 3 76338956 76340415 PCT