Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0582 atggagaAAGAAACAGAGATGAAGCAATCCAAATTCAAGAGGATTTGTGTGTTCTGTGGCAGTAGTCCAGGGAACAAAACTAGTTATAAGGATGCTGCTATTGAGCTTGGAAGGGAATTGGTGTCAAGAAATATTGATCTAGTTTATGGAGGGGGCAGCATTGGCTTGATGGGGTTGATTTCTCAGGCTGTTTACGAGGGTGGCCGCCATGTAATTGGAGTTATTCCCAAGACACTTATGCCAAGAGAGCTCACTGGAGAAACAGTGGGGGAAGTGAAGGCAGTAGCAGACATGCATCAAAGGAAAGCAGAGATGGCTAAGCGCTCTGATGCCTTTATTGCCTTACCCGGTGGCTATGGGACACTTGAGGAACTCCTCGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATACCTTTTTGTCTTTCATTGACAAAGCGGTGGAGGAAGGCTTCATCAGCCCCACTGCTCGCCATATAATTGTATCAGCCCCAACACCAAAAGAACTTGTCAAAAAAATGGAGattcaaTCCGTTGATCAAAATTCGAAAACAGAGAAACTGGGATGGAGATTTATTCTTACCTAA 627 0.4386 MEKETEMKQSKFKRICVFCGSSPGNKTSYKDAAIELGRELVSRNIDLVYGGGSIGLMGLISQAVYEGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNTFLSFIDKAVEEGFISPTARHIIVSAPTPKELVKKMEIQSVDQNSKTEKLGWRFILT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0582 208 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Ssu8g0582 208 Gene3D - 2 189 - -
Ssu8g0582 208 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 1 203 - -
Ssu8g0582 208 PANTHER LOG FAMILY PROTEIN YJL055W 1 203 - -
Ssu8g0582 208 SUPERFAMILY MCP/YpsA-like 10 187 - -
Ssu8g0582 208 TIGRFAM TIGR00730: TIGR00730 family protein 13 188 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0582 Ssu-Chr8 9361470 9366173 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0582 K22522 - gmx:100811156 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0582 8 9361470 9366173 Ssu8g0582 8 9361470 9366173 ECH
Ssu7g2415 7 47111525 47115300 Ssu8g0582 8 9361470 9366173 ECH
Ssu8g0582 8 9361470 9366173 Ssu3g2487 3 77163909 77168348 PCT