Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2487 ATGATAGAGAAGACAAAGTgtgagaaaaaggaagagatgGAGGGTGAAGAAACTGAGATGAAACAATCCAGGTTTAAGAGGATTTGTGTGTTCTGTGGTAGCAGCCCTGGGAACAAGAGTAGCTATAAGGATGCTGCTATTGAGCTTGGGAAGGAGTTGGTGTCAAGAAATATTGATCTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGCTTGGTTTCCCAGGCTGTTTATGATGGGGGTCGCCATGTAATTGGAGTTATTCCCAAGACACTCATGCCAAGAGAGATTACTGGAGAGACAGTGGGGGAAGTGATGGCAGTAGcagacatgcatcaaagaaaaGCAGAGATGGCTAGGCACTCTGATGCCTTTATTGCCTTACCCGGTGGCTATGGAACACTTGAGGAGCTTCTTGAGGTGATAACTTGGGCTCAGCTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTAGATGGATACTACAATTCCTTGTTGTCTTTCATTGACAAAGCTGTGGAGGAAGGCTTCATTTGCCCCAAAGCACGCCACATAATTGTATCTGCCCCATCCACAAAAGAGCTTGTCAAAAAGATGGAGGAATATTTCCCGCAACATGAAAGAGTTGCCTCTAAGCTAAGTTGGGAAACTGAGCAGATAGATTACTCCTCAAATTGTGACATGTCTAGGTGA 696 0.4296 MIEKTKCEKKEEMEGEETEMKQSRFKRICVFCGSSPGNKSSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPKTLMPREITGETVGEVMAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFICPKARHIIVSAPSTKELVKKMEEYFPQHERVASKLSWETEQIDYSSNCDMSR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2487 231 Pfam Possible lysine decarboxylase 70 200 IPR031100 -
Ssu3g2487 231 SUPERFAMILY MCP/YpsA-like 24 203 - -
Ssu3g2487 231 PANTHER LOG FAMILY PROTEIN YJL055W 16 231 - -
Ssu3g2487 231 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG1 16 231 - -
Ssu3g2487 231 Gene3D - 14 202 - -
Ssu3g2487 231 TIGRFAM TIGR00730: TIGR00730 family protein 26 203 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2487 Ssu-Chr3 77163909 77168348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2487 K22522 - gmx:100819644 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0582 8 9361470 9366173 Ssu3g2487 3 77163909 77168348 PCT