Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0572 ATGTACAAGAACCAGCTTCAGGAGCTGGCCCAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCTCCACTCTCCGTCAGGCCGAGCACTCCGCCGCCGAAGTCGCTCTCGGTTCCCTCTCCCACCGCGGCCCCTCCCACTCCCTCGCCGCCAAGATCCTCGATGAGACTGGAGTCTACAAGAACCTTCTACAGGAAATCGCGCAAAGGGTAGGAGCTCCATTGCCTCATTACACAACATTCAGGTCGGGCCTAGGGCATTTACCTGTTTTTACTGGGATAGTAGAACTGGCTGGAATTACATTTACCGGTGAACCTGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCGTCTTTAAAACAATTGGCTAAAGAGACTGCAAGCTCCTCAACTGAACCAGAGAACAATGATGAACTTGAACAGATCACTATAGCGCGGGCTTTACTGAACTACCGTTTGAAGGAAAAGATGGCGATGTCTAATCCGAATGCTCCCATTCCATTTCATAAAAAGTTTCAGATTCAAAATCCTAGGCCAATCAGTTCTCAACTGCCGCCTGCCACTTCATCAAAGATCCTTCCCCTAATTTGCCAAAAGACAGCACCTCGAAGTAAACCTTCATTGGCAACAGCAAATGAAAGTCCTAGAAGCAGGCATCCACAGGCAGCAGTGACCAGTGACAATTCCACCATGCCACCACAGTCTTGTGCTCTAGAAAGCCGAGGGACCCGTCCCCTGAAGTTCCCTGCAGTGGGAGCAGCACCTTATGTTCCCCTTCGACAAATGAGATCATCTTGCCAGGGGATTGCACCTGCAGTGACTATAAGGACTGTAGTACCTGTATTTGCTGCACCAACTCTTCCTGTAATACGGGCTCCTCCGGTACGAGTTGCTCCTCCAGTCAATATTCGGCAAGCTGTTCCTGTATACGCTGCTCCACATCCAAAAAAGGATGAACCTGCTCCCGTCCTAAAAGATCTACCAATTGCTAGTGCCTCTGGCCAGCAAGATAAACTGCCCGTTAAAATTCAAGAGATGGACAAGGCTGAGAACATCCCACCAGAATCAGAGACTATGCGTATTTTGGAGCagctgaaaatttga 1206 0.4975 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALGSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNAPIPFHKKFQIQNPRPISSQLPPATSSKILPLICQKTAPRSKPSLATANESPRSRHPQAAVTSDNSTMPPQSCALESRGTRPLKFPAVGAAPYVPLRQMRSSCQGIAPAVTIRTVVPVFAAPTLPVIRAPPVRVAPPVNIRQAVPVYAAPHPKKDEPAPVLKDLPIASASGQQDKLPVKIQEMDKAENIPPESETMRILEQLKI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0572 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Ssu8g0572 401 PANTHER - 1 400 - -
Ssu8g0572 401 Pfam Double-stranded RNA binding motif 2 65 IPR014720 -
Ssu8g0572 401 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Ssu8g0572 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Ssu8g0572 401 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 400 - -
Ssu8g0572 401 Gene3D - 84 155 - -
Ssu8g0572 401 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Ssu8g0572 401 SMART DRBM_3 88 154 IPR014720 -
Ssu8g0572 401 SMART DRBM_3 2 69 IPR014720 -
Ssu8g0572 401 Coils Coil 399 401 - -
Ssu8g0572 401 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Ssu8g0572 401 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Ssu8g0572 401 MobiDBLite consensus disorder prediction 237 271 - -
Ssu8g0572 401 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Ssu8g0572 401 Gene3D - 2 83 - -
Ssu8g0572 401 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0572 Ssu-Chr8 9222676 9224882 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0572 - - gmx:100815739 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0572 8 9222676 9224882 Ssu3g2496 3 77325397 77328198 PCT