Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2496 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCTCCACGCTCCGGCAGGCGGAGCACTCCGCCGCGGAGGTCGCGCTCAATTCCCTCTCCAACCGCGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTCTTGCAGGAAATTGCACAGAGGGTAGGGGCTCCGTTGCCGCAGTACTTTACATTCAGGTCAGGCTTAGGACATCTTCCTGTTTTTACTGGGACGGTAGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAACAAGAAACAAGCGGAGAAAAATGCAGCTATGGCGGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCAGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACCGACTTAAGGAAAAGATTTCAATGTCAAATCCAAATGCTCCGATTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCTCTACCTGCTGCTACATCAAAGATTCTTCCGTTAATTTGCCAAAAGGTGGCTCCTCGAAGCAGGCATCCAGCAGCAGCATCTCCAGCACCAACTGGCCCTGACAATTCTGCAATGCCACAACTTTCTGCTACACCAGAAAGCCGAGGAACCCGTACGCCCTATGTTCCCTGCCGCCGGAGCAGCACCTTATGTTCCCATTAG 855 0.5193 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNPNAPIPFPKKFQIQNPRPTSPQPLPAATSKILPLICQKVAPRSRHPAAASPAPTGPDNSAMPQLSATPESRGTRTPYVPCRRSSTLCSH 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2496 284 PANTHER - 1 261 - -
Ssu3g2496 284 Gene3D - 84 155 - -
Ssu3g2496 284 MobiDBLite consensus disorder prediction 196 221 - -
Ssu3g2496 284 SUPERFAMILY dsRNA-binding domain-like 2 69 - -
Ssu3g2496 284 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Ssu3g2496 284 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 261 - -
Ssu3g2496 284 SMART DRBM_3 2 69 IPR014720 -
Ssu3g2496 284 SMART DRBM_3 88 154 IPR014720 -
Ssu3g2496 284 MobiDBLite consensus disorder prediction 251 284 - -
Ssu3g2496 284 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Ssu3g2496 284 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Ssu3g2496 284 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Ssu3g2496 284 MobiDBLite consensus disorder prediction 236 284 - -
Ssu3g2496 284 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Ssu3g2496 284 SUPERFAMILY dsRNA-binding domain-like 88 160 - -
Ssu3g2496 284 Gene3D - 2 83 - -
Ssu3g2496 284 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2496 Ssu-Chr3 77325397 77328198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2496 - - gmx:100812728 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2496 3 77325397 77328198 Ssu3g2496 3 77325397 77328198 ECH
Ssu8g0572 8 9222676 9224882 Ssu3g2496 3 77325397 77328198 PCT