Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0571 ATGAGTTCAGCGGATCACGAGCCTGACCCCGAACCTCCCATCCGATTCCACTTGCCTCCCCTCTCACCGAGCCTCTTCGATGCCGAACCATCGGAGCTCCAACAATCCAACGGTTCCGCCGTCCGACCCTCCTCCGATCCCTCCAGCCCTACCAGCAGCGGTTACGCCGCCGAGAGGGGCAGCAGCACCGCCACAAGTGTCTCCCAGGTCGAAGAGGTCCTTCACAACGAAATCGAAGAAATGAGCATCCACGATTCCCAACCCCTCTCTAACCCCTCGGGGCACCCCGGGAAACGACATAGCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGGTACGGAGATGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTAGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGCCAGATGCTTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCGCTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCTGGTGCTATCTTGCAAGATGTTGCTGATTCTGGTGTTCTGTTTGCATTTCTGATGTGCAGACACAAGGTAATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTTTGCTTGCCAAGATACAATGCTTTTGCATTTGTATATGCTTATATCCACTATTTTGATGATGACACATACTTGATGTTGCTGACCACGAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCATATCGAAACGGTTCTTTTGAAGTCAAATGTCCTTAATGAAGTTCAGAGGTCCTTGCTAGATGGTGGGATGCATATTGAGGATCTACCACCCTTACCTCGTTCTGGATCATCTCATTTGGGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGATTAAGGGAACCTAATTGTGGCATTGGTGGTGCTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCGCCGATTAACACTCCTAAGCAGCAGAAAAgACTGTATAGAGCTTACCAGAATCTTTTTGCATCCATGCATAATAAAGGAATTGGGCCACACAAAACTCAGTTTAGAAGGGATGAAAACTATGGTAACAAATATTTTGACTCATGCTTTGTAGTTACAATACATCCTAGAtatgaatatgtgatattttga 1548 0.4438 MSSADHEPDPEPPIRFHLPPLSPSLFDAEPSELQQSNGSAVRPSSDPSSPTSSGYAAERGSSTATSVSQVEEVLHNEIEEMSIHDSQPLSNPSGHPGKRHSDEDDASISWRKRKKHFFVLSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIHGQMLVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAFLMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNAFAFVYAYIHYFDDDTYLMLLTTSSDAFYHLKDCRIHIETVLLKSNVLNEVQRSLLDGGMHIEDLPPLPRSGSSHLGQHRLPSDSPERLREPNCGIGGAAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQNLFASMHNKGIGPHKTQFRRDENYGNKYFDSCFVVTIHPRYEYVIF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0571 515 Pfam First Longin domain of FUZ, MON1 and HPS1 115 235 IPR043972 GO:0016192
Ssu8g0571 515 PANTHER BNAC04G15860D PROTEIN 43 494 - -
Ssu8g0571 515 PANTHER SAND PROTEIN-RELATED 43 494 IPR004353 GO:0006623
Ssu8g0571 515 MobiDBLite consensus disorder prediction 1 68 - -
Ssu8g0571 515 MobiDBLite consensus disorder prediction 401 420 - -
Ssu8g0571 515 MobiDBLite consensus disorder prediction 81 106 - -
Ssu8g0571 515 Pfam Second Longin domain of FUZ, MON1 and HPS1 276 366 IPR043971 GO:0016192
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 115 132 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 218 230 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 133 153 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 167 181 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 295 311 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 271 284 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 348 374 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 247 268 IPR004353 GO:0006623
Ssu8g0571 515 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 320 343 IPR004353 GO:0006623
Ssu8g0571 515 MobiDBLite consensus disorder prediction 28 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0571 Ssu-Chr8 9207979 9211952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0571 K20195 - gmx:100816794 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0571 8 9207979 9211952 Ssu8g0571 8 9207979 9211952 ECH
Ssu8g0571 8 9207979 9211952 Ssu3g2497 3 77349511 77361018 PCT