LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2497	ATGACAGctaTACCCGATGATAGTGATGGAGTGTTACTAACTGGAAAGGATTGGGCCAGAGCAGAGAGAGGAAATGTTAGCCCGGCCCGCGAATGGCAGTTCGTGGCGGGGTTTGAACGCGAACGTCCGCTGACTGCAGCTACCGAGGGGGAGATCAGGGAGGATGCCCCATCCAGCCCCGGCAGTAGCGGCTACGCCGGCGAAGGAGGCAGCACCAGCACCACCAGCGGGTCCCAATTCGAAATTGAACACGAAGAAGTAGCGAAGGACGCGAGGATTGAAATCGATCGAATCTCAATTTCCGATTCCCACACGTCTTGGATTCCCGGAAAACGGCACCTCGACGAGGATGATGCTTCCTTATCGTGGAGGAAAAGGAAGAAGCATTTCTTTGTTCTCAGTCACGCTGGCAAACCTATATATTCTAGGTATGGAGATGAACACAGGCTTGCAGGGTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTTGAGAACGGgGGTGACTCTATCAAATTGGTGAGGGCTGGAAGGCATCAGGTGGTTTTTCTTGTGAAAGGACCAATTTACTTAGTCTGCATCAGCTCCACAGAAGAACCTTATGAGTCATTAAGGGGCCAGTTGGAGCTAATTTATGGTCAGATGCTTGTTATACTAACAAAATCGATAAACAGATGTTTTGAGAAGAACCCAAAATTTGATATGACACCCTTGCTTGGTGGAACAGAAATTGTCTTCTCTTCTCTAGTCCACTCTTTCAGTTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTCCCTCTTGCATATGCAACAAGGCAAGCTGCAGGAGCTATTTTGCAAGACGTTGCTGATTCAGGTGTTTTGTTTGCAATACTGATGTGCAGGCACAAGGTAATCAGTCTTGTTGGTGCTCAGAAAGCTTCCCTTCATCCTGATGATATGCTGCTGGTGTCCAACTTTGTCATGTCATCTGAATCCTTCAGGATGTCAGAATCATTTTCTCCAATTTGCTTGCCAAGATATAATCCTTCAGCATTTTTGTATGCATATATCCATTATTTTGATGCCGACACATACTTGATGTTGCTAACCACTAGTTCAGATGCGTTTTATCATCTTAAGGATTGTAGGATTCGTGTTGAAATGGTCCTTTTGAAGTCAAGCGTCCTTAGTGAAGTTCAGAGATCCTTGCTAAACGGGGGAATGCATGTTGAGGATCTGCCACCTATACCTCATTCTGGATCATCTCCTTTGGGCCAGCACATACTTCCACCAGATTCACCTGACAGATTTAAGGAAGCTAATTCTGGCATTGGGGGTCCTGCTGGGTTGTGGCATTTCATATACCGCAGCATATATCTGGATCAATATGTCTCTTCAGAGTTTCCATCATCAATTAATACACCTCAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCGATGCATGATATAGGAATTGGGCCACACAAAACTCAATTTAGAAGAGACGAAAACTACGTTCTTCTCTGTTGGGTGACGCAAGATTTTGAGCTTTATGCTGCATTTGATACCCTTGCAGACAAGGACTTGGCAATAAAGACTTGCAGCCACGTTTGTCAATGGATAAAAGATGtggaaaatgaaatatttttgctTGGAGCTAGCCCCTTTTCATGGTGA	1680	0.4446	MTAIPDDSDGVLLTGKDWARAERGNVSPAREWQFVAGFERERPLTAATEGEIREDAPSSPGSSGYAGEGGSTSTTSGSQFEIEHEEVAKDARIEIDRISISDSHTSWIPGKRHLDEDDASLSWRKRKKHFFVLSHAGKPIYSRYGDEHRLAGFSATLQAIISFVENGGDSIKLVRAGRHQVVFLVKGPIYLVCISSTEEPYESLRGQLELIYGQMLVILTKSINRCFEKNPKFDMTPLLGGTEIVFSSLVHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLVSNFVMSSESFRMSESFSPICLPRYNPSAFLYAYIHYFDADTYLMLLTTSSDAFYHLKDCRIRVEMVLLKSSVLSEVQRSLLNGGMHVEDLPPIPHSGSSPLGQHILPPDSPDRFKEANSGIGGPAGLWHFIYRSIYLDQYVSSEFPSSINTPQQQKRLYRAYQKLFASMHDIGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDTLADKDLAIKTCSHVCQWIKDVENEIFLLGASPFSW	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2497	559	MobiDBLite	consensus disorder prediction	64	79	-	-
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	260	281	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	308	324	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	128	145	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	231	243	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	361	387	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	537	557	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	284	297	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	146	166	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	180	194	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	333	356	IPR004353	GO:0006623
	Ssu3g2497	559	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	508	522	IPR004353	GO:0006623
	Ssu3g2497	559	Pfam	Second Longin domain of FUZ, MON1 and HPS1	289	381	IPR043971	GO:0016192
	Ssu3g2497	559	Pfam	First Longin domain of FUZ, MON1 and HPS1	128	249	IPR043972	GO:0016192
	Ssu3g2497	559	Pfam	Third Longin domain of FUZ, MON1 and HPS1	445	546	IPR043970	GO:0016192
	Ssu3g2497	559	PANTHER	BNAC04G15860D PROTEIN	13	559	-	-
	Ssu3g2497	559	PANTHER	SAND PROTEIN-RELATED	13	559	IPR004353	GO:0006623
	Ssu3g2497	559	MobiDBLite	consensus disorder prediction	38	79	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2497	Ssu-Chr3	77349511	77361018	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2497	K20195		-	zju:107411372	835.099

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g2497	3	77349511	77361018	Ssu3g2497	3	77349511	77361018	ECH
	Ssu8g0571	8	9207979	9211952	Ssu3g2497	3	77349511	77361018	PCT