Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0564 ATGCGAATCCTCGTCGTGCTCTCCCTCACCACCCTTCTCCTCTTCTGCTCCTTCTCTCCCATCCTCTGCGACGACCTCGCCGACGACGAGGACCTCAGCTTCCTCGACGAGCCCTCCACGTCGGAGCACGACCACGACCACTTCGACGATGACGCCAACTTCGGCGACTTCTCGGACTTTGGGGACCCGGAGGCGTACAAGGAGCCCGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGAGAAGAATTTCAGCGACGTCGTCAAGAACAACCGCTTCGTGATGGTCGAATTCTACGCGCCCTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCCGCCGCCACCGAGCTCAAGGGCGAAAATGTCATTTTGGCGAAGGTGGATGCCACGGAGGAGAATGAATTGGGCCAGCAGTACGATGTTCAGGGTTTCCCCACTGTCTACTTCTTCATTGATGGCATTCACAAGCCTTATAATGGCCACAGAACCAaAGATGCTATAGTGACGTGGATTAAGAAGAAGATAGGACCTGGTATATACAACGTAACTACAGTGGATGATGCTCAACGCATTTTGGCCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGACTTGAGGATGATGTCAGTTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTGACCCAGACGTTAAGCGCCCAGCTTTGATCCTGGTcaagaaagaggaggaaaaaCTTAACCGCTTTGATGGAAAATTTGAGAAGTCGGCAATAGTGGACTTTGTCTTCTCCAACAAGCTTCCTTTGgtaacaatttttacaaaagaaagtGCCCCGTCAGTCTTCGAAAATCCAATCAAAAAACAGTTGTTGCTGTTTGCGACCTCAAATGATTCGGAGAAGTTCGTCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAAGGGGaagTTGATCTTTGTATATGTGGAAATGGATAATGAAGATGTTGGAAAGCCTGTTTCAGATTACTTTGGTATCAGTGGGAATGCTCCAAAAGTACTTGCATACACTGGGAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTGTTGACAAAATTAAGGCATTTGGGGAAGATTTCCTTAAAGACAAGCTCAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTAATGATGGTGACGTGAAAATAGTAGTTGGGaataattttgatgaaattgtcTTGGATGAGTCAAAGGATGTTCTCCTTGAGATCTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAACCAATATACAACAAGCTTGCAAAACATCTGCGTGGTATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCAAAGCCTGATGGATTCCCtactcttctcttcttcccaGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTGAATCCGAGAGCTCTGGTGCCAAGGGGGGCTCCGATGCCAAAGAGAGCCAGAGTAGCAATAGTGATGTGAAGGATGAATTATGA 1683 0.4545 MRILVVLSLTTLLLFCSFSPILCDDLADDEDLSFLDEPSTSEHDHDHFDDDANFGDFSDFGDPEAYKEPEVDEKDVVVLKEKNFSDVVKNNRFVMVEFYAPWCGHCQALAPEYAAAATELKGENVILAKVDATEENELGQQYDVQGFPTVYFFIDGIHKPYNGHRTKDAIVTWIKKKIGPGIYNVTTVDDAQRILANETKVVLGFLNSLVGPESEELAAASRLEDDVSFYQTVNPDVAKLFHIDPDVKRPALILVKKEEEKLNRFDGKFEKSAIVDFVFSNKLPLVTIFTKESAPSVFENPIKKQLLLFATSNDSEKFVPVFQEAAKSFKGKLIFVYVEMDNEDVGKPVSDYFGISGNAPKVLAYTGNDDGKKFVLDGEVTVDKIKAFGEDFLKDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKHLRGIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTSESESSGAKGGSDAKESQSSNSDVKDEL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0564 560 PRINTS Thioredoxin family signature 143 154 - -
Ssu8g0564 560 PRINTS Thioredoxin family signature 94 102 - -
Ssu8g0564 560 PRINTS Thioredoxin family signature 102 111 - -
Ssu8g0564 560 CDD PDI_a_family 77 174 - -
Ssu8g0564 560 TIGRFAM ER_PDI_fam: protein disulfide isomerase 74 560 IPR005792 GO:0003756
Ssu8g0564 560 SUPERFAMILY Thioredoxin-like 183 293 IPR036249 -
Ssu8g0564 560 SUPERFAMILY Thioredoxin-like 409 521 IPR036249 -
Ssu8g0564 560 SUPERFAMILY Thioredoxin-like 281 411 IPR036249 -
Ssu8g0564 560 CDD PDI_a_PDI_a'_C 414 516 - -
Ssu8g0564 560 Gene3D Glutaredoxin 64 178 - -
Ssu8g0564 560 ProSitePatterns Thioredoxin family active site. 434 452 IPR017937 -
Ssu8g0564 560 ProSiteProfiles Thioredoxin domain profile. 62 179 IPR013766 -
Ssu8g0564 560 TIGRFAM pdi_dom: protein disulfide-isomerase domain 79 177 IPR005788 GO:0003756
Ssu8g0564 560 PANTHER PROTEIN DISULFIDE-ISOMERASE 50 539 - -
Ssu8g0564 560 ProSitePatterns Thioredoxin family active site. 95 113 IPR017937 -
Ssu8g0564 560 Gene3D Glutaredoxin 179 282 - -
Ssu8g0564 560 Pfam Thioredoxin 414 499 IPR013766 -
Ssu8g0564 560 Pfam Thioredoxin 76 176 IPR013766 -
Ssu8g0564 560 Gene3D Glutaredoxin 408 522 - -
Ssu8g0564 560 CDD PDI_b_family 182 281 - -
Ssu8g0564 560 Pfam Thioredoxin-like domain 217 388 - -
Ssu8g0564 560 Gene3D Glutaredoxin 283 407 - -
Ssu8g0564 560 MobiDBLite consensus disorder prediction 526 550 - -
Ssu8g0564 560 CDD PDI_b'_family 303 393 - -
Ssu8g0564 560 MobiDBLite consensus disorder prediction 526 560 - -
Ssu8g0564 560 ProSiteProfiles Thioredoxin domain profile. 391 521 IPR013766 -
Ssu8g0564 560 PANTHER PROTEIN DISULFIDE ISOMERASE 50 539 - -
Ssu8g0564 560 SUPERFAMILY Thioredoxin-like 69 179 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0564 Ssu-Chr8 9119254 9123040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0564 K09580 - gmx:100170706 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0564 8 9119254 9123040 Ssu8g0564 8 9119254 9123040 ECH
Ssu8g0564 8 9119254 9123040 Ssu3g2503 3 77442843 77446347 ECH
Ssu8g0564 8 9119254 9123040 Ssu3g2503 3 77442843 77446347 PCT