Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2503 ATGTTAACTCGTAGACGACTCGTCGTTTCGCTCTCCCTCACCACTCTCCTCCTCTTTTCCTCCCTCTCCCTCACTCTCTGCAAGAAAGCCCCTCAAAACGACGACGGCGAAGATCTCAGCTTCCTCGAGGAACCCGACGACACCTCCGCCACTTCACACCACGGCCATGGCCACGGCCATTTTCCAGATCCCGACCACttcgacgacgacgacgacttCGGCGACTTCTCCGGCTTCGACCCGTCCGCCGAGGAGGCGTTCGCGGAGCCCGCGGTGGACGACAAGGACGTCGTCGTTCTGAAGGAGCGCAACTTCACCACCGTCGTCGAGAACAACCGCTTCGTGATGGTGGAGTTCTACGCCCCCTGGTGCGGCCACTGTCAGGCCCTCGCGCCGGAGTACGCCGCCGCCGCCACCGAGCTCAAGCCCGACGGCGTCGTTCTGGCCAAGGTGGACGCCACCGTGGAGAACGAATTGGCGCACGAGTACGACGTTCAGGGTTTCCCCACCGTCTTCTTCTTCGTCGACGGGGTTCACAAGCCTTACACTGGCCAGAGAACCAAAGACGCTATAGTGACATGGATTAAGAAGAAGATAGGACCTGGTGTGTCCAACATAACTACGGTGGATGATGCTGAACGCATATTGACTTCTGAAAGTAAAGTTGTTCTGGGCTTCCTAAACTCCTTAGTTGGTGCTGAGAGTGACGAGCTGGCTGCAGCATCAAAACTTGAGGATGATGTCAATTTTTATCAAACTGTGGTACCCGATGTGGCAAAGCTTTTCCATATTGACTTGAGTGTTAAACGCCCTGCTTTGGTCTTGCTCAAGAAAGAGGAGGAGAAACTGAATCATTTTGATGGCAAATTTGTAAAAGCTGAAATAGCCGACTTTGTATCCTCCAATAAGCTTCCTTTGGTTACAACTTTTACAAGAGAAAGCGCCCCGTCAATCTTCGAAAGTCAAATCAAGAAACAGttgTTGCTGTTTGTGACTTCAAATGATACGGAGAAGTTTGTTCCAGTATTTAAAGAAACAGCAAAACTTTTCAAGGGAAAGCTGATCTTTGTTCATGTGGAAGTGGATAATGAAGATGTTGGAAAGCCTGTTGCAGTTTATTTTGGTATCACAGGGAATGCTCCCAAAGTTCTTGCATACACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAGAGATGACTGTTGACACAATTACAgCATTTGGGAATGATTTCCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGATCCAGTTCCTGAAAGTAATGGTGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTCTTGGACGAGTCAAAGGATGTTCTGCTTGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCCCTGGAACCAACATACAACAAGCTTGCTAAACATCTTCGCAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGGCTGATGGATTCCCcactcttctcttcttcccaGCTGGAAACAAGAGTTCTGACCCTACTCCTGTTGATGTGGATCGTACAGTGGTAGCCTTTTATAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAACCTCAACTTCTAAACCCGGGAGTGAGAGTTCTGATGTCAAGGAGAGCCAGAGCAGCAGCACCGGCGTGAAGGATGAATTATGA 1734 0.4758 MLTRRRLVVSLSLTTLLLFSSLSLTLCKKAPQNDDGEDLSFLEEPDDTSATSHHGHGHGHFPDPDHFDDDDDFGDFSGFDPSAEEAFAEPAVDDKDVVVLKERNFTTVVENNRFVMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATVENELAHEYDVQGFPTVFFFVDGVHKPYTGQRTKDAIVTWIKKKIGPGVSNITTVDDAERILTSESKVVLGFLNSLVGAESDELAAASKLEDDVNFYQTVVPDVAKLFHIDLSVKRPALVLLKKEEEKLNHFDGKFVKAEIADFVSSNKLPLVTTFTRESAPSIFESQIKKQLLLFVTSNDTEKFVPVFKETAKLFKGKLIFVHVEVDNEDVGKPVAVYFGITGNAPKVLAYTGNDDGRKFLLDGEMTVDTITAFGNDFLEDKLKPFLKSDPVPESNGGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIESIVIAKMDGTTNEHPRAKADGFPTLLFFPAGNKSSDPTPVDVDRTVVAFYKFLRKHASIPFQLQKPTSTSKPGSESSDVKESQSSSTGVKDEL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2503 577 Gene3D Glutaredoxin 200 303 - -
Ssu3g2503 577 Pfam Thioredoxin-like domain 238 411 - -
Ssu3g2503 577 Gene3D Glutaredoxin 84 199 - -
Ssu3g2503 577 Gene3D Glutaredoxin 427 556 - -
Ssu3g2503 577 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 569 - -
Ssu3g2503 577 CDD PDI_b_family 203 302 - -
Ssu3g2503 577 SUPERFAMILY Thioredoxin-like 205 314 IPR036249 -
Ssu3g2503 577 ProSiteProfiles Thioredoxin domain profile. 78 200 IPR013766 -
Ssu3g2503 577 TIGRFAM ER_PDI_fam: protein disulfide isomerase 95 577 IPR005792 GO:0003756
Ssu3g2503 577 Pfam Thioredoxin 97 197 IPR013766 -
Ssu3g2503 577 Pfam Thioredoxin 435 520 IPR013766 -
Ssu3g2503 577 PRINTS Thioredoxin family signature 115 123 - -
Ssu3g2503 577 PRINTS Thioredoxin family signature 164 175 - -
Ssu3g2503 577 PRINTS Thioredoxin family signature 123 132 - -
Ssu3g2503 577 SUPERFAMILY Thioredoxin-like 91 200 IPR036249 -
Ssu3g2503 577 ProSitePatterns Thioredoxin family active site. 116 134 IPR017937 -
Ssu3g2503 577 MobiDBLite consensus disorder prediction 36 64 - -
Ssu3g2503 577 CDD PDI_b'_family 314 414 - -
Ssu3g2503 577 SUPERFAMILY Thioredoxin-like 302 432 IPR036249 -
Ssu3g2503 577 ProSitePatterns Thioredoxin family active site. 455 473 IPR017937 -
Ssu3g2503 577 SUPERFAMILY Thioredoxin-like 433 542 IPR036249 -
Ssu3g2503 577 Gene3D Glutaredoxin 304 426 - -
Ssu3g2503 577 TIGRFAM pdi_dom: protein disulfide-isomerase domain 101 198 IPR005788 GO:0003756
Ssu3g2503 577 ProSiteProfiles Thioredoxin domain profile. 421 539 IPR013766 -
Ssu3g2503 577 MobiDBLite consensus disorder prediction 547 577 - -
Ssu3g2503 577 CDD PDI_a_PDI_a'_C 435 537 - -
Ssu3g2503 577 CDD PDI_a_family 98 195 - -
Ssu3g2503 577 PANTHER PROTEIN DISULFIDE ISOMERASE 2 569 - -
Ssu3g2503 577 MobiDBLite consensus disorder prediction 47 64 - -
Ssu3g2503 577 MobiDBLite consensus disorder prediction 547 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2503 Ssu-Chr3 77442843 77446347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2503 K09580 - gmx:100785630 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2503 3 77442843 77446347 Ssu3g2503 3 77442843 77446347 ECH
Ssu8g0564 8 9119254 9123040 Ssu3g2503 3 77442843 77446347 ECH
Ssu8g0564 8 9119254 9123040 Ssu3g2503 3 77442843 77446347 PCT