Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0547 ATGTTCCCTTTCGAACACGGAAAGATGTCACTTAGGTTCCTCTCAGTCTCGGTCCTCGACTTCAACAAACGCGCGACCAGGAGGCATGGCTCCCCGCGGTTCCGCCGCCGCCACCGCGGGCATGCGGCGGCGCCATCTGGGCGGAGGAAACAGTTCGGGAAGCGCGGGTGCGGCGGCGGCGGCAGCAGCAACATGCTGAGGTTCTACACGGACGACGCCCCGGGGCTGAAGATTTCGCCGACGGTGGTGCTGGTCATGAGCCTCTGCTTCATCGCCTTCGTCACCGCCCTCCACGTGTTCGGCAAACTCTACCGCCACAAATCTGGCGCTGCCGTTTGA 339 0.6372 MFPFEHGKMSLRFLSVSVLDFNKRATRRHGSPRFRRRHRGHAAAPSGRRKQFGKRGCGGGGSSNMLRFYTDDAPGLKISPTVVLVMSLCFIAFVTALHVFGKLYRHKSGAAV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0547 112 PANTHER SEC61 SUBUNIT BETA 34 109 IPR030671 GO:0005784|GO:0006886
Ssu8g0547 112 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA 34 109 - -
Ssu8g0547 112 MobiDBLite consensus disorder prediction 27 58 - -
Ssu8g0547 112 Pfam Sec61beta family 62 101 IPR016482 -
Ssu8g0547 112 MobiDBLite consensus disorder prediction 28 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0547 Ssu-Chr8 8872281 8873801 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0547 K09481 - gmx:100814692 104.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0547 8 8872281 8873801 Ssu3g2528 3 77846703 77847020 PCT