Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2528 ATGGCGAGAGGCGCCTCTCAATCTCAATCTGGAACTTCCGCTCCCACCACGCGACCGGGGGTGATGGCCCCTCGCGGCTCCGCTGCCGCCACCGCCGGCATGCGCCGTCGCCGTCTCGGCGGGGGAAGCAGCTCCGCCTCCGTCGGAGGTGGCTCCGGCGCCGGAAGCAACATGCTGCGGTTCTACACCGACGACGCCCCCGGCCTCAAGATCTCGCCGACGGTGGTGCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACCGCTCTCCACGTGTTCGGCAAGCTCTACCGCTACCGATCCGGCGCCGGCGTTTGA 318 0.6855 MARGASQSQSGTSAPTTRPGVMAPRGSAAATAGMRRRRLGGGSSSASVGGGSGAGSNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTALHVFGKLYRYRSGAGV 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2528 105 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g2528 105 PIRSF Sec61_beta 5 102 IPR030671 GO:0005784|GO:0006886
Ssu3g2528 105 PANTHER SEC61 SUBUNIT BETA 1 103 IPR030671 GO:0005784|GO:0006886
Ssu3g2528 105 Pfam Sec61beta family 55 94 IPR016482 -
Ssu3g2528 105 PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA 1 103 - -
Ssu3g2528 105 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2528 Ssu-Chr3 77846703 77847020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2528 K09481 - gmx:100795313 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0547 8 8872281 8873801 Ssu3g2528 3 77846703 77847020 PCT