Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0539 ATGGGAAGCAGAGTTAGCCTTTTGATCTTGTTCCTTGTTCTTTGTCATGGCGTGGCAGTGACCATGGGGCGGTTCTGGAGGACAGAGGTGGAAGAGGGACCTCCAAGGCCAGACAAGTTGTTCTTGATGCTCAAATCCAAGCGCGTGGCCAAAACTGACGCTGGGGAGATGCGAGTGCTAGAAAGCTATGGTGGTAGGATTTCGGAGAGGCGCTTGCATATTGGTTTCATCACTATGGAACCAAGGTCCCTCTTCATTCCTCAATACCTCGACTCCACTTTGATCATATTCGTGCGTTCAGGGGAGGCAAAGGTGGGATTCATATATAAAGATAAGCTAGCGCAAAGGCATTTGAAGATGGGAGATGTATATCAGATTCCAGCCGGTTCTGCATTCTATGTGGTGAACATAAAGGAGGCTCAAAAGCTTCACATTATCTGCAGCATTGACCCCTCTGAGAGCTTGGGAGTTGATGTTTTCCAGTCCTTCTATATTGGAGGAGGAGCGCATCCAGCCTCGGTACTTTCTGGATTCGAGCCTGAAATCCTTGAAACTGCTTTTAATGCATCAGGAGCAGAGTTGCGAAAACTCTTCACTAGGCAACACGAGGGCCCCATTGTGCACGTGGGCGATTCACATGCCACGAGCATATGGACCAAGTTCCTTCAACTTAAGGAGGAAGAGAAGCTGCAGCACCTGAGGGAGATGGtgcaacaagaagaagaagaagaagctggtgatgaagaagaagagcagCAAACAAGTTGGTCATGGAGGAAGCTCTTGGAATCTGTATTCGGGGATGAGATCAACAAGAACACAAGGGAGAAGGTTACAAGAAAATCCCCCCACTCTTGCAACCTCTATGACAGAAAGCCAGATTTCAAAAACAGCTATGGTTGGAGCGTTGCTGTAGATGGCTCTCATTATTCTCCACTCAAAAGTTCTGGCGTTGGCATTTATCATGTCAATCTCTCAGCGGGATCAATGATGGCACCCCATGTGAATCCAAGGGCAACGGAGTATGGCATAGTACTAAAAGGGTCAGGCAGAATCCAAATAGTTTTTCCAAACGGAAGCAATGCAATGGACACCCACATCAAAGAAGGGGACGTGTTCTTTATTCCGAGGTACTTTGCCTTCTGCCAAATAGCATCAAGGAGTGAACCGCTAGAGTTCTTTGGGTTCACCACCTCGGCTCAGAGGAACAGGCCACAGTTTCTTGTTGGTGCCACGTCACTGATGAGGACCATGGTGGGGCCCGAGCTTGCGGCTGCGTTTGGGGTGAGCGAGGAGACCATGCGGCGCGTGGCTAACGCACAACACGAAGCCGTGATTCTACCCACTCCTTGGGCTGCACGTGCACACCGCAAAAaggaggaggtggtggtggatgcGACTCCTAAGCTTACAAGGAATGAAATGATTATGGGCTTTTGA 1440 0.4681 MGSRVSLLILFLVLCHGVAVTMGRFWRTEVEEGPPRPDKLFLMLKSKRVAKTDAGEMRVLESYGGRISERRLHIGFITMEPRSLFIPQYLDSTLIIFVRSGEAKVGFIYKDKLAQRHLKMGDVYQIPAGSAFYVVNIKEAQKLHIICSIDPSESLGVDVFQSFYIGGGAHPASVLSGFEPEILETAFNASGAELRKLFTRQHEGPIVHVGDSHATSIWTKFLQLKEEEKLQHLREMVQQEEEEEAGDEEEEQQTSWSWRKLLESVFGDEINKNTREKVTRKSPHSCNLYDRKPDFKNSYGWSVAVDGSHYSPLKSSGVGIYHVNLSAGSMMAPHVNPRATEYGIVLKGSGRIQIVFPNGSNAMDTHIKEGDVFFIPRYFAFCQIASRSEPLEFFGFTTSAQRNRPQFLVGATSLMRTMVGPELAAAFGVSEETMRRVANAQHEAVILPTPWAARAHRKKEEVVVDATPKLTRNEMIMGF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0539 479 PANTHER OS03G0336100 PROTEIN-RELATED 1 457 - -
Ssu8g0539 479 Pfam Cupin 287 434 IPR006045 -
Ssu8g0539 479 Pfam Cupin 48 192 IPR006045 -
Ssu8g0539 479 PANTHER OS03G0336100 PROTEIN 1 457 - -
Ssu8g0539 479 SUPERFAMILY RmlC-like cupins 11 444 IPR011051 -
Ssu8g0539 479 CDD cupin_7S_vicilin-like_N 49 209 - -
Ssu8g0539 479 CDD cupin_7S_vicilin-like_C 293 444 - -
Ssu8g0539 479 Coils Coil 222 250 - -
Ssu8g0539 479 Gene3D Jelly Rolls 278 450 IPR014710 -
Ssu8g0539 479 Gene3D Jelly Rolls 38 219 IPR014710 -
Ssu8g0539 479 SMART Cupin_1_3 42 195 IPR006045 -
Ssu8g0539 479 SMART Cupin_1_3 286 435 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0539 Ssu-Chr8 8691017 8693274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0539 3 459 Miscellaneous Gene Families AT2G18540 27.859 1.35e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0539 - - gmx:100818796 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0539 8 8691017 8693274 Ssu8g0539 8 8691017 8693274 ECH
Ssu8g0539 8 8691017 8693274 Ssu3g2537 3 77971756 77974714 PCT