Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2537 ATGCCATCAAACTCTCTCATGGGAAACACAACCACCCTTTTGCTCTTGCTCTTCGTTCTCTGCCATGGAGTCGCCACCGCAATGGGCTTCCTTGAAGGTGAAGATTGGTGGACAGAGTCATCAAACAGTTTGTTCTTGATGCACAACTCCAAGAGAGTGGTCAAGACTGATTTTGGGGAAATGAGAGTACTGAAAAGCCGTAGTGATATGATTTTGGATAGGCGCATGCACATTGGATTCATCACTATGGAACCAAAATCCTTGTTCGTTCCTCAGTACCTTGACTCCAATCTCATCATGTTTATCCGTAGAGGGGAAGCAAAGTTGGGATTCATATATGATGATGAACTAGCGGAAAGGTCGTTGAAGACAGGGGACGTGTATATGATTCCAGCCGGTACAGTATTCTATTTGGTGAATACAGGGGTAGGTCAGAGACTTCACATCATCTGCAGCATTGATCCCTCTACAAACTTGGGACTAGGTACCTTCCAGTCCTTCTATATTGGAGGAGGAGCCAATTCACCCTCAGTGCTTTCTGGATTCGAACCTGTGATCCTTGAAACTGCATTTAACAAATCAAGAACGGAGGTAGAGAAAATCTTCTCCGGGGAACTAGATGGTCCAATTGTGTACGTGGGTGATTCTCATGCACCTAGCTTATGGGCTAAATTTCTTCAACTGAAGAAGGAAGACAAAGTGCAACACCTGAAGAAAATGGTGCAAgaccaagaagaagaagaagaagaagaagatgaagaagaagaagaagagaagcaaACAAGTAGATCATGGAGGACGCTCTTGGAAACTGTATTTGGGAACGTGAATGAGAAGATAGAGAACAAAGACACTGCTGGTTCCCCTGACTCTTACAATCTCTATGACAAAAATCCTGATTTCAAAAACGCTTATGGTTGGAGCAAGGCACTGCATGGAGGCGAGTATCCTCCACTCAAAAAACCTGACATTGGCATTTTTCATGTCAATCTCACTGCGGGATCCATGATGGCACCTCATCTGAATCCAAGAGCAACTGAGTATACCATAGTGCTGAGGGGTTATGGGAGACTTCAAATAGTGTTTCCAAACGGAAGCAATGCAACGAACATTGAAATCAAACAAGGGGACGTGTTTGTTGTGCCGAGATACTTCCCCTTCTGTCAAATAGCATCAAGGGATGGACCCTTAGAGTTCTTTGGGTTCTCCACCTCTGCCAGGGAGAGCAAGCCACAGTTTCTGGCTGGTGCTGTGTCCCTTCTTAAGACCATGCTGGGGCCTGAGCTCGCGGCAGCGTTAGGGGTGAGTGAGGACACATTGCGGCGTGCCCTTGATGCTCAGCATGAGGTTGTGATACTGCCATCAGCATGGGCTGCACCACCGGGAAATGCAGGGAAGATGAAGATGGAAGAAGAGAAGGTGTACACGCAGCCTAAGGCTATTACAAGCTTTGTCAATGATGTGGTTATGGATGTTTTTTAA 1482 0.4447 MPSNSLMGNTTTLLLLLFVLCHGVATAMGFLEGEDWWTESSNSLFLMHNSKRVVKTDFGEMRVLKSRSDMILDRRMHIGFITMEPKSLFVPQYLDSNLIMFIRRGEAKLGFIYDDELAERSLKTGDVYMIPAGTVFYLVNTGVGQRLHIICSIDPSTNLGLGTFQSFYIGGGANSPSVLSGFEPVILETAFNKSRTEVEKIFSGELDGPIVYVGDSHAPSLWAKFLQLKKEDKVQHLKKMVQDQEEEEEEEDEEEEEEKQTSRSWRTLLETVFGNVNEKIENKDTAGSPDSYNLYDKNPDFKNAYGWSKALHGGEYPPLKKPDIGIFHVNLTAGSMMAPHLNPRATEYTIVLRGYGRLQIVFPNGSNATNIEIKQGDVFVVPRYFPFCQIASRDGPLEFFGFSTSARESKPQFLAGAVSLLKTMLGPELAAALGVSEDTLRRALDAQHEVVILPSAWAAPPGNAGKMKMEEEKVYTQPKAITSFVNDVVMDVF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2537 493 SMART Cupin_1_3 45 199 IPR006045 -
Ssu3g2537 493 SMART Cupin_1_3 292 441 IPR006045 -
Ssu3g2537 493 CDD cupin_7S_vicilin-like_C 299 449 - -
Ssu3g2537 493 CDD cupin_7S_vicilin-like_N 53 213 - -
Ssu3g2537 493 Gene3D Jelly Rolls 285 456 IPR014710 -
Ssu3g2537 493 PANTHER OS03G0336100 PROTEIN-RELATED 7 463 - -
Ssu3g2537 493 Coils Coil 227 264 - -
Ssu3g2537 493 PANTHER OS03G0336100 PROTEIN 7 463 - -
Ssu3g2537 493 SUPERFAMILY RmlC-like cupins 8 450 IPR011051 -
Ssu3g2537 493 MobiDBLite consensus disorder prediction 237 264 - -
Ssu3g2537 493 MobiDBLite consensus disorder prediction 244 258 - -
Ssu3g2537 493 Gene3D Jelly Rolls 38 225 IPR014710 -
Ssu3g2537 493 Pfam Cupin 50 151 IPR006045 -
Ssu3g2537 493 Pfam Cupin 292 438 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2537 Ssu-Chr3 77971756 77974714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2537 40 459 Miscellaneous Gene Families AT2G18540 30.254 1.82e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2537 - - gmx:547942 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2537 3 77971756 77974714 Ssu3g2537 3 77971756 77974714 ECH
Ssu8g0539 8 8691017 8693274 Ssu3g2537 3 77971756 77974714 PCT