Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0535 ATGATGAGAGGCAGCAACCACCTGATCGGTCTAATAAACTTCTTGACCTTCTTGCTGTCAGTCCCAATCCTGGGGGGTGGGATATGGCTGAGCACCAGAGCCAACAACACAGAATGCCTCAAGTTCCTTCGGTGGCCTTTGATCGTCATAGGAATCAGCATCATGGTCACCTCCTTAGCCGGTTTGACCGGTTCATGTTACCGCAACACCTTCCTCATGAGCCTCTACCTCGTTGTCGTGTTCTTCATAATCTTGGTGCTCGTCGGCTTCATCATCTTTGCCTATGTTGTCACGGAGAAGGGCTCGGGGAGGGAGGTACAAAACCGCGCTTACTTGGACTATTACCTGCAGGACTATTCGGGTTGGTTGGAGGAACGCGTGACCAGTGATAGCTATTGGAGAAAGATTATTAGCTCTTGTGTTAGGGACTCTAAGGTTTGTGGTAAGCTTGGGAGAACCGTCTATGGGGCGCCTGAAACTGCTGATATGTTCTACCTCAGAAAGCTCACTCCTATTcagTCTGGATGCTGCAAGCCCCCAGCAGAGTGTGGGTATAACTATCAGAATGAGACAGTGGTGGGAACCAACCCAGACTGCACTAGGTGGAGCTATGACCAACACTTGCTTTGCTATGACTGTGACTCTTGCAAGGCTGGTGTGCTGGCTAGTCTCAAGAAAACGTATAGGAACAACCGCAAGATAGATAACTGCGAATCCTGCGGTGAAACAAGGATGACAAAGGCACGACCTGGCTAG 756 0.4974 MMRGSNHLIGLINFLTFLLSVPILGGGIWLSTRANNTECLKFLRWPLIVIGISIMVTSLAGLTGSCYRNTFLMSLYLVVVFFIILVLVGFIIFAYVVTEKGSGREVQNRAYLDYYLQDYSGWLEERVTSDSYWRKIISSCVRDSKVCGKLGRTVYGAPETADMFYLRKLTPIQSGCCKPPAECGYNYQNETVVGTNPDCTRWSYDQHLLCYDCDSCKAGVLASLKKTYRNNRKIDNCESCGETRMTKARPG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0535 251 Pfam Tetraspanin family 7 227 IPR018499 GO:0016021
Ssu8g0535 251 ProSitePatterns Transmembrane 4 family signature. 51 73 IPR018503 GO:0016021
Ssu8g0535 251 PANTHER TETRASPANIN-8-RELATED 2 229 IPR044991 GO:0009734|GO:0016021
Ssu8g0535 251 PRINTS Transmembrane four family signature 40 66 - -
Ssu8g0535 251 PRINTS Transmembrane four family signature 67 95 - -
Ssu8g0535 251 PRINTS Transmembrane four family signature 7 30 - -
Ssu8g0535 251 PANTHER TETRASPANIN-3-LIKE 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0535 Ssu-Chr8 8621228 8639213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0535 2 247 Miscellaneous Gene Families AT5G60220 60.432 1.88e-110 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0535 - - gmx:100820399 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0535 8 8621228 8639213 Ssu8g0535 8 8621228 8639213 ECH
Ssu8g0535 8 8621228 8639213 Ssu3g2547 3 78125514 78130376 PCT