Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2547 ATGAGAGCAAGCAACCACTTGATCGGTCTCCTAAACTTCCTGACGTTCCTGCTCTCCATTCCAATCCTAGGTGGGGGGATATGGCTGAGCAGCAGAGCCAACAACTCGGACTGTCTCAAGTTCCTGCAGTGGCCGCTGATCATAATCGGGGTCAGCATCATGGTGGTGTCGCTGGCGGGTTTCGCGGGCGCGTGTTACCGCAACACCTTCCTCATGCGGCTCTACCTCGTTGCCATGTTCCTCGTCATTGCGGTGCTCATCGGCTTCATAATATTCGCGTACGTGGTCACGGACAAAGGGTCCGGCCGAAGGGTCACGAACCGGGCTTACTTGGAGTACTACCTCGACGACTATTCCGGCTGGTTGGAGGAGCGCGTCGCGAGTGATAGCTACTGGGGGAAGATTAGCTCCTGTATTAGGGACTCCAGGGTGTGCGCTAGGATGGGGAGAACCATTAATGGGGTGCCTGAAACTTCTGATATGTTCTACTCTAGACAACTCACACCTATTCAGTCTGGTTGCTGCAAGCCCCCGGCAGATTGTGGCTATGTCTATCAGAATGAGACAGTGTGGAACCTAGGGTCAGGACTGATGGGAGCCAACCCAGATTGCACTAAGTGGGGCAATGACCAAGAGCAGCTTTGCTATGCCTGTGATTCTTGCAAGGCTGGTGTGCTGGCAAGTCTCAAGAAGAGTTGGAGGAAGGTCTCAGTGATCAACATTGTTGTTATGATCCTCCTTGTGATTGTTTACATAATTGCTTATGCAGCATATAGGAACAACCGCAGGATGGATAACGATGAACCCTATGGTGAAGCCAGGATGACAAAGGCCCAACCTAGTGCCTTTCATCTTTAG 858 0.521 MRASNHLIGLLNFLTFLLSIPILGGGIWLSSRANNSDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVAMFLVIAVLIGFIIFAYVVTDKGSGRRVTNRAYLEYYLDDYSGWLEERVASDSYWGKISSCIRDSRVCARMGRTINGVPETSDMFYSRQLTPIQSGCCKPPADCGYVYQNETVWNLGSGLMGANPDCTKWGNDQEQLCYACDSCKAGVLASLKKSWRKVSVINIVVMILLVIVYIIAYAAYRNNRRMDNDEPYGEARMTKAQPSAFHL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2547 285 PRINTS Transmembrane four family signature 66 94 - -
Ssu3g2547 285 PRINTS Transmembrane four family signature 39 65 - -
Ssu3g2547 285 PRINTS Transmembrane four family signature 6 29 - -
Ssu3g2547 285 Pfam Tetraspanin family 6 254 IPR018499 GO:0016021
Ssu3g2547 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Ssu3g2547 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2547 Ssu-Chr3 78125514 78130376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2547 1 277 Miscellaneous Gene Families AT5G60220 72.202 4.68e-131 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2547 - - gmx:100788977 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2547 3 78125514 78130376 Ssu3g2547 3 78125514 78130376 ECH
Ssu8g0535 8 8621228 8639213 Ssu3g2547 3 78125514 78130376 PCT