Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0534 ATGCAGACGACCCCAAAGACAAGAACTAGCTCCTCCGAAGTGCCTCAGAAGGTGTCCCCTCGTGGTGGACGCCAACTCAGGCCTGCTACACTAGACACTGCTTCTTCATTAAACCAAGCTAATAAaacatcaaaggaaagaagTCCCAAAGTCACTGAGCGCAGATCACCCAGAAGCCCCGCTCCGGAgAGGAAGCGTCCAAGCAGAATATCTGAATTGGAATCTCAGATTTATCAGCTCAAAGAGGATTTGAAGGTGGTGAGGAACCAGCTCAGTTTGTCTGAATCATGCAAGAAGCAAGCTCAGCAAGATGCTGAATTGTCCAAGAAGCAACTAGCTTCCCTATCCGTGAAACTTGAAGATTCTCAACAGCAACTTCTGAAGTTCTCTGCTACTGAACAAGCTCGTGTTTTTGAGCTCCAGAAAACTATAGAAGAGCATGATAAGGCGTGGCAATCGGAGCTCAAGGCTGCCCGACAGAAGCTCTCAGACAACACTGCTGCGCTGACCTCTGCCATCAGTGAAATTCAGCAGCTCAAGGTTCAACTTGAATTGGTAGCTAATTGTGAGAATGCACACACCCAAATCGCAGAATCATCAGACGTGGAGCTACTAAACTTGAAGGATAACTTGGCAGAATCTCTTTCACTTGTGGAGAACATGAAAAACCAACTCAGGGATTCCAAAGAGTCAGCTCAGGCACAAGCTTTGGTCAATGAGACTCTGCGGCAACTCGAGGCTGCAAAAAGAACTGTTGAGTTCCTCAGGGCTGATGCTGCTAAAGCTGTGCATGGTTACAACTCTGCTGCTTTGGAGTTAGACCAATCTCGAGCACGGGTGAACTCCCTAGAGGCACTAGTAAGCAAACTTGAGTTTGGCCTCATCAGTAACAAATGCAACCATTCTTTAAATCTTGCAGATGATGGAAACATGGAGCTGAAAGCTGAGATATTACAAAAGGGTGAGGATCCTAATCGCATTGAAGCAGAAATTTATTCTTTGAGGTCTGAGGTAGGACCACTGAGGTCTGCCATAGAGACTGCTGAGACTAAGTACCAGGAAGAACAGATTCAGTGTTCCGTGAAGATCAGGAAAGCCTATGAGTTGATTGAACAGATAAAATCAGAATCAAGCCAGAGGGAATCTGAGCTAGAGGctgaattgaaaagaaagaaagctgATATTGAAGAGTTGAAGGCAAACCTAATGGATAAGGAAACTGAGTTGCAAGGCATTGTGGAGGAGAATGAGAAGTTGAATTTGCAACTTGAAAAAAGCATGCCATCCCAAAGAGAACTTGAACTTAGGAAGGAGCTTCAAAGACTAGATGAATGTGTGGCTGAGTTGAAGGCTGATCTGATGGACAAGGAAACAACATTGCAAAGCATATCTGAAGAGAATGAAATGCTGAAGTTGGAGATTAGTAAGAGGTTTGCACATGGTGATGGTGGTAAAGTGAGGGAGGAAGTTGCTGCAGAACTAGAGGCAGTTAAGGCTGCTGAACACGAGGCTGTTATGAAACTCGGTATTGTGATGGAAGATGCAGATAGGAGCAACCGAAAGGCGGCAAGGGTGGCCGAGCAGCTGGAAGCAGCTCAAGCAGCAAATTCAATAATAGAAGCAGAACTACGAAGATTGAAGGTACAGTCTGATCAATGGAGGAAGGCTGCAGAGGCAGCTGCTGCTATGCTCTCAGCAGGGAACAATGGGAAGCTCACTGAGAGGTCATTATCTTTGGACAACAACTATAACTCTATAATGAATAAGTACTCACCTTTTTGTGAGGAACTTGATGATGATTTCCAGACTAAGAAAAATGGTAACATGCTGAAGAAGATTGGGGTCTTGTGGAGGAAACCTCAAAAATAG 1869 0.4414 MQTTPKTRTSSSEVPQKVSPRGGRQLRPATLDTASSLNQANKTSKERSPKVTERRSPRSPAPERKRPSRISELESQIYQLKEDLKVVRNQLSLSESCKKQAQQDAELSKKQLASLSVKLEDSQQQLLKFSATEQARVFELQKTIEEHDKAWQSELKAARQKLSDNTAALTSAISEIQQLKVQLELVANCENAHTQIAESSDVELLNLKDNLAESLSLVENMKNQLRDSKESAQAQALVNETLRQLEAAKRTVEFLRADAAKAVHGYNSAALELDQSRARVNSLEALVSKLEFGLISNKCNHSLNLADDGNMELKAEILQKGEDPNRIEAEIYSLRSEVGPLRSAIETAETKYQEEQIQCSVKIRKAYELIEQIKSESSQRESELEAELKRKKADIEELKANLMDKETELQGIVEENEKLNLQLEKSMPSQRELELRKELQRLDECVAELKADLMDKETTLQSISEENEMLKLEISKRFAHGDGGKVREEVAAELEAVKAAEHEAVMKLGIVMEDADRSNRKAARVAEQLEAAQAANSIIEAELRRLKVQSDQWRKAAEAAAAMLSAGNNGKLTERSLSLDNNYNSIMNKYSPFCEELDDDFQTKKNGNMLKKIGVLWRKPQK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0534 622 Coils Coil 266 286 - -
Ssu8g0534 622 MobiDBLite consensus disorder prediction 1 70 - -
Ssu8g0534 622 Coils Coil 432 473 - -
Ssu8g0534 622 Coils Coil 512 549 - -
Ssu8g0534 622 Coils Coil 98 125 - -
Ssu8g0534 622 MobiDBLite consensus disorder prediction 1 18 - -
Ssu8g0534 622 Coils Coil 374 422 - -
Ssu8g0534 622 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 3 4 622 - -
Ssu8g0534 622 Coils Coil 204 258 - -
Ssu8g0534 622 Coils Coil 70 90 - -
Ssu8g0534 622 MobiDBLite consensus disorder prediction 46 70 - -
Ssu8g0534 622 MobiDBLite consensus disorder prediction 29 45 - -
Ssu8g0534 622 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 4 622 IPR029688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0534 Ssu-Chr8 8597486 8601688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0534 - - gmx:100798050 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0534 8 8597486 8601688 Ssu8g0534 8 8597486 8601688 ECH
Ssu8g0534 8 8597486 8601688 Ssu3g2549 3 78177896 78178258 PCT