Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0527 ATGTCTCGGACTGCAGCTGGTGTCGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGATGCATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCGTGGCTCAGAAACATgCCTTGCAGCAATTCGGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCGTGTTCAACAAATTACTGGTGCTGCAAACAATATGCAACAGCGATCAGGGAATGTATTGCCTCCTCCATTGGATGATTTCACCAATACTTCATCAGAAAAACTGATTGTGAAAAATGTATCAAGTACCTCTGTCAGCATTGTAAGAGGTTCACCTCCTAATGGGAGTTCTGGGAGACCTATAGCTCTACCTGCTGCTGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGGTGGTTTATTATGTCCAAATGGACTGTCAAAGCCTAAACCTGATACAATCAGCAGCACACTACCCTTTTCCTCTGCTGTTACAGGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGGCCACTGCCAAGTGATGGGAGTCATAGTATGACTCCTGGGGTAAATAATGAATTATTGAAACCTGTTAAACAATATGGTAGCATGGATATCCTGGCTAGTGCTGGCGAAAGAACTTTGGCTTCTAATGTTTCTCTTTCACCTGTGAAATTGAACTACCAGTTGTCTTCTCTACCATTAGCCAGAGATAGCAATAGAGGCAGTTGTACTGCAACAAACCCAACAGATTCTATTGACATCACTGGACAGTCATGCAGCTTTGGTCCTGAGGAAGCAATTATTTCTACTAATGAAGAGATTGAGAATTTGTCCTGTGAATTATCTTCTGTTGACATTGATAGAAATGCCCAAAATGAACACTACAGCCTATCTAAACCTAGCAGCTCACCTCCTGACAATGTGTTGGCTAAATCTATGCAATCTCAAGGATCACAGTATAATACTGACAAATTTAGAGATGCAATGATTACAAATGCAGACAGTAAAGCTGCTACATTTGATAATGAGGTTTGTAATTTAAAGGAACAGTGGGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCCAATACTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTGTTTGTTGTTCTTATTTGCCAAAGTCATCCAGTTTCCTTCATGTCTCAAACCATTCTAGTCCTCATATTCTGCAACATGGTGAACCTTGTAATGTTGCAAATGCTGGTTCTTTAGATGCCGATGATAAAGTTGGGGATGCCTCACTATTACATGCACGTAACATATTATGCAATGGATATTCCGAGAAATCAATCAGCACAAGCTCTTATGGGTTCCTCCATGATGAAAGAAATGAGCAACACATTGGAAGATTAGTTAGTGAAGCAGTTAATATTGGAAGTGATGCTGCTATGGACAAGGGTGAGAGTagtataatttcaaatatattttccaTGGAGTTCAATGCCTGGGATGACTCGCTAACATCACATGAGAGTTTGGCCAAGTTGTTGAGTGACAACACTGACAACCAGAATGGTCCACTAAAGAAATCTAGTTCTTGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCAAGACAGGAGGAATCCAAAATCCAAGCCAATGTACATCCATCTTCTGGTGCCAACCAGCAATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGGACAAGCTGGGTATTGCAAATGGCTTCCCTGCCAATAACCTCGAGGAATCTGCAAATCTCAGCAGTGGTCATTTTATTGCTTCAAACAATAAGCTTTCTGCTATTTCAAGAGCACAAATCTCAGCACCGCCAGGATTTTCAGTTCCAAACAGGGCACCACCTCCTGGTTTCTCCTCTCTTGAGAGAATGGGGCATGCTTTTGACTCCCTTTCTGGGAATTCATTTCTTGACCCTTCTTTCTTACTGAGAAATTCATATCAAACACCCTCAAATGGAAATATTGGTGGTCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAAGGGAGAATTCAAGGTGCACGAAACAGCCCATTGCTGGACATGCGATCCAATTACCCCAAACAGTTAAATTACTTTGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTCTCACCACAGCAAGACCTTCGATTTTCTGAAATTGACAATACCTTTTCTCAGCTTGGGGATTCTTATGGCATCTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCCTCATTTCCTCAGTTGTCTCTGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGCCAATTGGATGGGTGGAATCAAGTGCAGAGTGGAAATAGTCTGCGTGTGGCTGAGcttttgagaaatgaaaggcttGGATTTAACAAGTTTTATAGAGAATATGATGATTCAAAATATCAGATGCCAAATTCTAGGGATCTGTACAACAGAACATTTGGGATTTGA 2658 0.3965 MSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNSDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAANNMQQRSGNVLPPPLDDFTNTSSEKLIVKNVSSTSVSIVRGSPPNGSSGRPIALPAAAWGTRATNCQPAAGGLLCPNGLSKPKPDTISSTLPFSSAVTGTIQASLNSDVTKRPLPSDGSHSMTPGVNNELLKPVKQYGSMDILASAGERTLASNVSLSPVKLNYQLSSLPLARDSNRGSCTATNPTDSIDITGQSCSFGPEEAIISTNEEIENLSCELSSVDIDRNAQNEHYSLSKPSSSPPDNVLAKSMQSQGSQYNTDKFRDAMITNADSKAATFDNEVCNLKEQWDLSLDSQSQVVSANTEVEDDVTTFDNQRLKDPEVVCCSYLPKSSSFLHVSNHSSPHILQHGEPCNVANAGSLDADDKVGDASLLHARNILCNGYSEKSISTSSYGFLHDERNEQHIGRLVSEAVNIGSDAAMDKGESSIISNIFSMEFNAWDDSLTSHESLAKLLSDNTDNQNGPLKKSSSWKVQSNNQSRFSFARQEESKIQANVHPSSGANQQFPKNGSLIQDFVERDFSLDKLGIANGFPANNLEESANLSSGHFIASNNKLSAISRAQISAPPGFSVPNRAPPPGFSSLERMGHAFDSLSGNSFLDPSFLLRNSYQTPSNGNIGGPGDIEFMDPAILAVGKGRIQGARNSPLLDMRSNYPKQLNYFENEARVQLLMQRSLSPQQDLRFSEIDNTFSQLGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGWNQVQSGNSLRVAELLRNERLGFNKFYREYDDSKYQMPNSRDLYNRTFGI 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0527 885 Gene3D - 2 49 IPR012677 -
Ssu8g0527 885 MobiDBLite consensus disorder prediction 335 359 - -
Ssu8g0527 885 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 885 IPR039780 GO:0004842|GO:0030014
Ssu8g0527 885 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 885 - -
Ssu8g0527 885 SUPERFAMILY RNA-binding domain, RBD 14 52 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0527 Ssu-Chr8 8433849 8439480 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0527 K10643 - gmx:100796804 1472.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2558 3 78314241 78320556 Ssu8g0527 8 8433849 8439480 PCT