LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2558	ATGAGTGACGAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAgATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCCGAGAAGGATGACACTGAGGGGCGATGCCCCGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAGCTGTGAGAGATTGgtgaatgaaattaatatggagaaaaagatgaagaatcAGAAAGCAAAGTCTAAATCATCTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGATTGCCTCTTAATCTTGCAGATGAAGATCTTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAGGTGTCAATGTCTCGAACGGCAGCTGGTGTCATTCAACAGTTTCCAAATGATACTTGCAGTGTATATATAACTTATTCAAAGGAAGAGGACGCGATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGgGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCGGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACTAAAGATGAAATAATTTCAGCATACACTAGAACTCGAGTTCAACAAATCACTGGTGCCACAAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCAGTGGATGACAGTATGAATAATTCTTCTGCTAAGCCTATTGTGAAAAATGCTTCAAGTAACTCTGTTAGCACTGTAAGAGGTTCACCTCCTAATGGAATCTATGGGAGACATATTGCCCTTCCTATTAGTGCTGCATGGGGTACTCAGGCCACAAATTGTCAGCCCCCTGCTGGAGGTCTATCATATTCAAATGGACCGTCCAAACCCAAACCTGATACAGGCAGCAGCACATTAGCCTTTTCTGCAGCTGTTACAGGCCCAATTCAGGCTTCTGATGTTACAAAGAGGCCACCATCGAGTGATGGGAGTCATAGTATGACACCTAGAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATACAACAATAGCGTGGACAGTCTGGTTAGTGCAGGAGAAAAAACTTCAGTTTCTGATGTTTCTCCTGTGCATGTGAATTTGAACAGCCAGTTGTCTTCTCTACCATTGTCCCGGGACAGTGATGGCTATTGTACTACAACAAACACAATAAATTCTACGAACATTACTGGACAGGCTTGTAACTCTGGTCCTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCCAGTGAGTTGTCCTCAATTAGCATTGATAGAAATGCTGAACATTGCGGTATAACCAAACCTAATAGCCCGCCTACAGATCATGATATCTTGATTAAATCTCCTCAGATTCAAGGACCACAGTATAATGTTGACAGATTTAGAGATGTAACAACAACAAACGTGGCTGGTAAAGCTACAGCGGATAATGTGGTTTGTAATTCTAGGGAACAGTGTGATTGGATATTGGATTCTCAATCTCTAGTAGTATCAGATACTACTGAAATTGATGATGACGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCAACGAGTTTCCTTCATGTATCAAACCATTCCAGCCCTTCTCTTCTGCAGCTTGGTGAACCTTGTACTGCCCTAAATGCAGGTTCTCTATCTGCTGATGATAGAGTTCAGGACGAATCTTTACTACATGCAtctaatatattatgtaatggCTACCCTGAGAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCATGATGAAAGAAATGGGCATAGCATTCGAAGATTAGTTGGTGAAGCAGTTAATGCTGAACATGATGCTGCTATGGATAAGGGTGAAAGTagtataatttcaaatatattgtcCATGGACTTTGATGCCTGGGATGACTCAATAACATCACCTCATAATTTAGCAAAGTTGTTGGGTGACAAAACTAATAACCAGTCTGGTCCTTTAAAAAAATCCAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGGTTCTCTTTTGCGCGGCAGGAGGAATCCAAAATCCAAATGTTTGAAGCACATGCATCTTATGGTGTCAGCCAGCAACAGCCAAACCATACAgtcattcaaaattttacagAAAGAGACTTGTATATGGATAAGTTGGGCATTGCAAATGGATTTCCTACCAGTAACTTTGAGGAAGGTGAAAATATGGGCAGTGGTCATTCCATTGCATCTTCTAATAAGCTTTCTGCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTCTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCTTCCCATGAGAGGGTGGAGCAGGCTTTTGACTCCATTTCTGGGAGTTCTTTGCTTGACCATTCATCCCTTTTGAGAAATTCATATCAGACACCTTCAGCTGGAAATCTTGGTAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCAGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTTGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTCTCACCACAGCAAAACCTTAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCTTATGCTGTTTCTTCAAGGTTAGATCAATCACAAGTCAGTAATCTAGGCCCATTTCAACAGCTGTCTTTGCAGCAGTCTACAAATGCAGTGTTGTCAAATGGGCAATGGGATGGGTGGAATGACGTGCAGAATGGAAACAGTTTGGGTGTGGCTGAGcttttgagaaatgaaagacttggattcaataaattttactcAGGATTTGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA	3075	0.4026	MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAASCERLVNEINMEKKMKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEDAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRTRVQQITGATNNMQRRSGNVLPPPVDDSMNNSSAKPIVKNASSNSVSTVRGSPPNGIYGRHIALPISAAWGTQATNCQPPAGGLSYSNGPSKPKPDTGSSTLAFSAAVTGPIQASDVTKRPPSSDGSHSMTPRVKSELLKPVKQYNNSVDSLVSAGEKTSVSDVSPVHVNLNSQLSSLPLSRDSDGYCTTTNTINSTNITGQACNSGPEEAMTATNEEIQNLSSELSSISIDRNAEHCGITKPNSPPTDHDILIKSPQIQGPQYNVDRFRDVTTTNVAGKATADNVVCNSREQCDWILDSQSLVVSDTTEIDDDVTSFDNQRLKDPEVVCRSYLPKSTSFLHVSNHSSPSLLQLGEPCTALNAGSLSADDRVQDESLLHASNILCNGYPEKLVSSSSYGLLHDERNGHSIRRLVGEAVNAEHDAAMDKGESSIISNILSMDFDAWDDSITSPHNLAKLLGDKTNNQSGPLKKSSSWKVHSNNQSRFSFARQEESKIQMFEAHASYGVSQQQPNHTVIQNFTERDLYMDKLGIANGFPTSNFEEGENMGSGHSIASSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSHERVEQAFDSISGSSLLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNLRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSLQQSTNAVLSNGQWDGWNDVQNGNSLGVAELLRNERLGFNKFYSGFDDSKFRMPNSGDLYNRTFGM	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2558	1024	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	1	1024	-	-
	Ssu3g2558	1024	MobiDBLite	consensus disorder prediction	318	379	-	-
	Ssu3g2558	1024	CDD	RRM_CNOT4	105	204	IPR034261	-
	Ssu3g2558	1024	MobiDBLite	consensus disorder prediction	805	824	-	-
	Ssu3g2558	1024	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	77	IPR013083	-
	Ssu3g2558	1024	SMART	rrm2_1	111	192	IPR003954	GO:0003676
	Ssu3g2558	1024	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	190	IPR000504	GO:0003723
	Ssu3g2558	1024	CDD	mRING-HC-C4C4_CNOT4	9	58	IPR039515	-
	Ssu3g2558	1024	SUPERFAMILY	RNA-binding domain, RBD	104	190	IPR035979	GO:0003676
	Ssu3g2558	1024	SUPERFAMILY	RING/U-box	3	66	-	-
	Ssu3g2558	1024	Gene3D	-	111	192	IPR012677	-
	Ssu3g2558	1024	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	196	IPR000504	GO:0003723
	Ssu3g2558	1024	MobiDBLite	consensus disorder prediction	318	368	-	-
	Ssu3g2558	1024	ProSiteProfiles	Zinc finger RING-type profile.	9	57	IPR001841	-
	Ssu3g2558	1024	Pfam	RING/Ubox like zinc-binding domain	9	61	-	-
	Ssu3g2558	1024	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	1	1024	IPR039780	GO:0004842\|GO:0030014
	Ssu3g2558	1024	SMART	rrm1_1	111	192	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2558	Ssu-Chr3	78314241	78320556	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2558	K10643		-	gmx:100801880	1837

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g2558	3	78314241	78320556	Ssu3g2558	3	78314241	78320556	ECH
	Ssu3g2558	3	78314241	78320556	Ssu8g0527	8	8433849	8439480	PCT