LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g0514	ATGGAGGCACAGCAGAGAAGAGTAGGAGGAGGACTGGTGCCGTTGTCGCCGTCGCAGACTCCGCGCTCCAGCGATAAGCCGGTGCGAGATCTGCGATCTGCGGATTCGAATTCCAACAGTCACAGCAAGTATGACAAGGACAAAGGCGTCAATGTGCAGGTCCTCGTGAGGTGCAGGCCGTTGAGTGAAGATGAAATGAGGCTGCACACGCCGGTTGTAATTTCGTGTAACGAAGGCAGAAGAGAGGTTTCAGCTGTGCAGAATATAGCCAACAAACAGATCGATAGAACCTTCGCATTTGACAAGGTTTTTGGTCCAAACTCTCAACAGAAAGAACTGTATGACCAGGCAGTGTCTCCTATTGTGTATGAAGTGCTTGAGGGCTATAACTGCACTATCTTTGCGTATGGACAGACCGGAACGGGGAAGACATACACAATGGAAGGAGGTGCAAGAAAGAAGAATGGCGAATTTCCAAGTGATGCTGGTGTCATCCCACGAGCTGTGAAACAGATTTTTGATATATTGGAAGCTCAGAATGCTGAGTATAACATGAAAGTAACGTTTCTGGAGCTTTACAATGAGGAAATAACAGATCTTTTGGCCCCTGAGGAGACTTCAAAATTTATAGATGACAAGTCTAAGAAACCTATTGCTCTAATGGAGGATGGGAAGGGGGGTGTTTTTGTCAGGGGTTTGGAAGAAGAGATGGTTTGCACTGCAAATGAAATTTACAAGATATTGGAAAAAGGTTCTGCAAAGAGGCGCACAGCGGAGACCCTTCTTAACAAACAAAGCAGCCGTTCTCACTCCATATTTTCTATCACAATTCATATTAAGGAATGTACTCCAGAGGGTGAGGAAATGATTAAATGTGGGAAGCTAAATCTTGTGGACCTCGCGGGCTCTGAGAATATTTCGCGTTCTGGTGCAAGAGAGGGTCGAGCAAGGGAGGCTGGGGAGATAAATAAAAGCTTGCTTACACTTGGTCGAGTGATTAATGCTCTAGTTGAGCACTCTGGTCATGTTCCATATAGGGATAGTAAATTAACCAGACTGTTGAGGGATTCCTTGGGTGGTAAAACCAAAACGTGCATTATTGCCACAATATCCCCTTCCATTCATTGTCTGGAAGAGACCCTTAGTACCTTGGATTATGCACACCGTGCCAAAAATATCAAGAACAAACCAGAGATTAATCAGAAAATGATGAAATCCGCAGTGATTAAGGATTTGTATTCTgaaattgaaagactaaaacaagAGGTTTATGCAGCAAGAGAGAAGAATGGAATCTATATACCACGTGATCGCTACCTTCATGAAGAAGCAGAAAAGAAGGCCATGACTGAAAAGATAGAGCGCATGGAACTAGAAGCAGAGTCTAAGGATAAGCAACTGATGGAGCTTCAAGAACTGTACAATTCTCAACAACTTTTGACTGCTGAATTAAGtgttaaacttgaaaaaactGAGAAAAGTCTGGAAGAAACTGAGCAGTCATTGTTTGATCTTGAGGAAAGGCACAGACAAGCAAATGcaacaattaaagaaaaggaatttcTGATATTAAATCTCCTAAAATCTGAGAAAGCACTTGTGGACCGTGCAATTGAATTACGAGCAGAGCTCGAGAATGCTGCATCGGATGTGTCAAACCTCTTTTCTAAAATTGAGAGGAAGGATAAAATTGAAGAAGGAAATAGAATACTTATCCAGAAATTCCAGTCTCAGTTAGCTCAACAACTTGAAGTTTTGCACAAGACAGTTTCAGCTTCGGTAATGCATCAAGAGCAGCAACTGAAGGACATGGAGGAAGATATGCAGTCTTTTGTATCAACGAAAGCAGAGGCTACTGAAGATCTTAGAGAAAGGGTAGGAAAGTTGAAGAACATGTATGGTTCTGGTATTAAAGCTCTGGATAATTTAGCTGAGGAGCTTAAAGTAAATAACCAGTTAACTTATGAAGACTTGAAATCTGAAGTAGCCAAGCATTCATCTGCCTTGGAGGATCTTTTTAAAGGAATCGCCTTAGAAGCTGATTCGTTACTAAATGATCTTCAAAGTAGTCTGCACAAGCAAGAGGCCAATTTAACTACTTATGCTCATCAACAACGAGAGGCGCATGCCAGAGCAGTGGAGACTACACGTGCAGTATCTAAAATAACGGTGAACTTCTTTGAGACAATAGACAGGCATGTATCCAGTCTGACCCAAATTGTGGAAGAAGCACAATTGGTCAATGATCAGAAATTGTGTGAACTTGAGAAGAAGTTTGAGGAGTGTACTGCCTATGAAGAAAAGCAACTACTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCAAATGCTAGAAAGAAACAATTGGTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAACTGTAGAACCAGTAAACTGCGGCAAGAAGCGTTAACCATGCAGGATTCCACTTCTTCTGTCAAGGAAGGATGGAGAGTTCACATGGAAAAAACAGAATCCAACTATCATGAGGATACTTACGCTGTAGAATCTGGGAAGAAAGACCTTGTGGAGGTTCTTCAAATCTGCCTCAACAAGGCAAAGGTAGGTTCACAACAATGGAGAAGGGCTGAGGAGTCTTTGCTTAGTTTAGAGAAGAGAAATGCGGTTTCTGTGGATACTATTGTGAGGGGAGGAATGGAAGCTAATCAAGCTCTACGTACCCGATTCTCAAGTGCTGTGTCAACTACACTTGAAGATGCAGGAATAGCAAACAAGGATATTAACTCATCCATTGATCATTCGTTGCAACTTGATCATGAAGCTTGTGGGAATCTGAACTCAATGATTATTCCATGCTGTGGTGATTTGAGAGAACTGAAGGGTGGTCATTACCACAGAATTGTAGAGATAACCGAAAATGCAGGGAAATGTCTTCTCAACGAATACATGGTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTACCTAGTGTTTCATCCATAGAAGAATTAAGAACCCCATCATTTGAGGAATTCTGGGATGGAAGATCTCCAAAACAAGCAAATGGAGATGTTAAACATATCGGGGCATATGAAGCCGCTCAATCAGTGAGAGATTCCAGAGTTCCTCTTACTGCTATTAACTAG	3144	0.4144	MEAQQRRVGGGLVPLSPSQTPRSSDKPVRDLRSADSNSNSHSKYDKDKGVNVQVLVRCRPLSEDEMRLHTPVVISCNEGRREVSAVQNIANKQIDRTFAFDKVFGPNSQQKELYDQAVSPIVYEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPSDAGVIPRAVKQIFDILEAQNAEYNMKVTFLELYNEEITDLLAPEETSKFIDDKSKKPIALMEDGKGGVFVRGLEEEMVCTANEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATISPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAVIKDLYSEIERLKQEVYAAREKNGIYIPRDRYLHEEAEKKAMTEKIERMELEAESKDKQLMELQELYNSQQLLTAELSVKLEKTEKSLEETEQSLFDLEERHRQANATIKEKEFLILNLLKSEKALVDRAIELRAELENAASDVSNLFSKIERKDKIEEGNRILIQKFQSQLAQQLEVLHKTVSASVMHQEQQLKDMEEDMQSFVSTKAEATEDLRERVGKLKNMYGSGIKALDNLAEELKVNNQLTYEDLKSEVAKHSSALEDLFKGIALEADSLLNDLQSSLHKQEANLTTYAHQQREAHARAVETTRAVSKITVNFFETIDRHVSSLTQIVEEAQLVNDQKLCELEKKFEECTAYEEKQLLEKVAEMLASSNARKKQLVQMAVNDLRESANCRTSKLRQEALTMQDSTSSVKEGWRVHMEKTESNYHEDTYAVESGKKDLVEVLQICLNKAKVGSQQWRRAEESLLSLEKRNAVSVDTIVRGGMEANQALRTRFSSAVSTTLEDAGIANKDINSSIDHSLQLDHEACGNLNSMIIPCCGDLRELKGGHYHRIVEITENAGKCLLNEYMVDEPSCSTPRKRLFNLPSVSSIEELRTPSFEEFWDGRSPKQANGDVKHIGAYEAAQSVRDSRVPLTAIN	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g0514	1047	PANTHER	KINESIN-LIKE PROTEIN KIF11	1	1047	-	-
	Ssu8g0514	1047	PRINTS	Kinesin heavy chain signature	128	149	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	PRINTS	Kinesin heavy chain signature	343	364	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	PRINTS	Kinesin heavy chain signature	260	277	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	PRINTS	Kinesin heavy chain signature	294	312	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	SMART	kinesin_4	49	401	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	Coils	Coil	527	561	-	-
	Ssu8g0514	1047	Coils	Coil	601	621	-	-
	Ssu8g0514	1047	Gene3D	Kinesin motor domain	47	433	IPR036961	-
	Ssu8g0514	1047	ProSiteProfiles	Kinesin motor domain profile.	51	393	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	MobiDBLite	consensus disorder prediction	1	46	-	-
	Ssu8g0514	1047	Coils	Coil	409	429	-	-
	Ssu8g0514	1047	PANTHER	KINESIN-LIKE PROTEIN KIN-5D	1	1047	-	-
	Ssu8g0514	1047	Coils	Coil	439	473	-	-
	Ssu8g0514	1047	Coils	Coil	481	515	-	-
	Ssu8g0514	1047	ProSitePatterns	Kinesin motor domain signature.	293	304	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Ssu8g0514	1047	Pfam	Kinesin motor domain	57	393	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu8g0514	1047	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	51	433	IPR027417	-
	Ssu8g0514	1047	CDD	KISc_BimC_Eg5	49	402	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g0514	Ssu-Chr8	8120879	8126622	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g0514	51	423	Miscellaneous Gene Families	AT5G06670	38.259	7.97e-66	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g0514	K10398		-	gmx:100816693	1938.31

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g0514	8	8120879	8126622	Ssu8g0514	8	8120879	8126622	ECH
	Ssu8g0514	8	8120879	8126622	Ssu3g2566	3	78613471	78619128	PCT