LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2566	ATGGAGGCTCAGCAGAGAAGAGGAGGATTGGTGCCGTTATCGCCGGCGCGCTCCAGCGACAAACCGGCGCGAGATCTGCGATCTGCGGATTCTAATTCGAGTGGTAACAGCAAGTTCGATAAGGACAAAGGCGTCAATGTGCAAGTCCTCGTTCGTTGCAGgCCGTTGAATGAAGATGAAGCGAGGTTGCATACGCCGATCGTGATTTCGTGTAACGAAGGTAGAAGAGAGGTTTCGGCTGTGCAGAATATAGCAAACAAACAGATCGATAGAACCTTCGCATTTGATAAGGTTTTTGGTCCTAGTTCCAAGCAGAAAGAACTGTATGAGCAGGCGGTGTCTCCTATTGTGAATGAAGTGCTTGAAGGCTATAATTGCACCATTTTTGCGTATGGTCAAACAGGGACAGGGAAGACATACACAATGGAAGGAGGTGCAAGGAAGAAGAATGGAGAGTTTCCAAGTGATGCTGGTGTCATCCCAAGAGCTGTGAAACAGATTTTTGATATATTAGAAGCTCAGAACGCCGAGTATAGCATGAAAGTAACTTTTCTAGAGCTTTACAATGAGGAGATAACAGATCTTTTGGCCCCTGAGGAGACTTTAAAATTTGTGGATGACAAATCTAAGAAACCTATAGCTCTTATGGAGGATGGAAAGGGGGGTGTTTTTGTCAGAGGTTTAGAAGAAGAGATGGTTTGCACtgcaaatgaaatttataagatattggaAAAGGGTTCTGCGAAAAGGCGAACAGCTGAGACTCTTCTTAACAAACAAAGCAGTCGTTCCCACTCCATATTTTCTATCACTATTCACATTAAGGAGTGTACTCCAGAGGGTGAAGAAATGATTAAATGTGGGAAGCTAAATCTTGTGGACCTCGCAGGGTCTGAGAATATTTCACGTTCTGGTGCAAGAGAGGGTAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACACTAGGTCGAGTGATTAATGCTCTAGTAGAGCATTCAGGTCATGTTCCTTATAGGGATAGCAAATTAACAAGACTGTTAAGGGATTCCTTGGGCGGTAAAACCAAGACATGCATCGTTGCTACGATATCACCTTCTATTCACTGTCTCGAAGAAACTCTTAGTACCTTGGATTATGCACACCGTGCCAAAAATATCAAGAACAAACCAGAGATCAATCAGAAGATGGTGAAATCTGCACTCATTAAGGATCTGTATTCTGAAGTTGACAGACTGAAGCAAGAGTTGTATGCTGCAAGGGAGAAGAATGGAATTTATATACCGCGTGATCGTTATCTTCATGAAGAAGCGGAGAAGAAGGCCATGGTTGAAAAGATAGAACGCATGGAACTAGAAGCAGAGTCTAAGGATAAGCAATTGGTGGAACTTCAAGAACTCAATAATTGTCAGCAACTTTTGACTGTCGAGTTAAGtgataaacttgaaaaaactGAGAAAAGTCTTGAAGAAACTGAGCAGTCATTATTTGATCTTGAGGAAAAGCACACACAAGCAAATGCAACAATTAAGGAAAAGGAATTTCTAATATTGAATCTACTGAAATCTGAAAAAGCACTTGTGGAGCATGCAATTGAGCTACGAGCTGATCTTGAGAATGCTGCATCCGATGTGTCAAACctgttttctaaaattgAACGGAAGGATAAAATTGAAGAAGGAAATAGAATACTTATCCAGAAATTCCAGTCTCAGTTAGCTCAACAGCTAGAAGATTTGCACAAGATGGTTGCAGCATCTGCAAAGCAACAAGAGCAGCAACTGAAGGAAATGGAAGAAGATATGCACTCTTTTGTATCAACAAAGGCAGAGGCTATTGAAAATCTTAGAGTGCGGGTAGGAAACTTAACGAACATATATGGTTCTGGCATTAAAGCTTTGGACAATTTAGCTGAGGAGCTTAAAGGAAATAATCAGTTAACTTTTGAAGAGTTGAATTCTGAAGTAGCCAAGCATTCATCTGCCTTGGAGGATCTTTTTAAAGGAATTGCATTAGAAGCTGATTCATTACTAAATGATCTTCAAAGTAGTCTCCAAAAGCAAGAGGCCAAGTTAACTGCTTATGCTCGACAACAGGAACAGGCACATGCCAGAGCAGTGGAGAATACACGTGCAGTATCTAAAATAACTGTGAACTTCTTTGAGACATTACACATGCATGCATCCAATTTGATCCAAATTGTGGAAGAATCACAATTTAGCAATGATCAAAAATTGTATGAACTTCAAAAGAAGTTTGAGGAGTGTACTGCACATGAAGAAAAACAACTATTGGAGAAAGTGGCAGAAATGCTTGCTAGCTCTAgttctagaaagaaaaaactgGTCCAAATGGCAGTTAATGATCTTCGGGAGAGTGCAAACACTAAAATCAGTAGGCTGAGGCAAGAAACATTAACCATGCAAGATTCCACTTCTTCTGTCAAAGCCGAATGGAAACTTCACATGGAAAAAACGGAGTCCAACTATCATGAGGATACTTCTGCAATAGAATCTGGAAAGAATGACCTTGTGGAGGTTCTTCAGTACTGCCGCAAGAAGGCAGAAGTAGGTGCACAACAATGGAGAAATGCTCAAGAGTCCATACTTAGCTTAGAGAAGAGAAATGCTGCTTCTGTGGATACTATTATTCGGGGAGGAATGGAAGCTAATCATCTCCTACGAGCCCAACTCTCAAGTGCTGGGTCAACTACACTTGAAGATGCAGAAATAGCAAACAAGGATATTAACTCATCCATTGAACATTCATTGCAACTTGATCATGATGCTTGTGGGAACCTAAACTCTATGATTATCCCATGCTGTGGTGACTTGAGAGAATTGAAGGGCGGTCATTACCAGAGAGTTGTAGAGATAACTGAAAATGCAGGGAAATGTCTTCTCAGTGAGTACGTGGTAGATGAACTATCTTGTTCAACACCAAGAAAGAGACCCTTCAATTTACCCAGTGTTTCATCCATAGAAGAACTAAGAAGTCCATCATTTGAGGAACTACTGAAATCATTCTGGGATGCTAAGTCTCCAAAACATGCAAATGGTGATGTTAGATACATTGGGCCATATGAAGCTGCTCAATCCGTAAGAGATTCCAGAGTTCCTCTTATAGCAATTAACTAG	3141	0.4024	MEAQQRRGGLVPLSPARSSDKPARDLRSADSNSSGNSKFDKDKGVNVQVLVRCRPLNEDEARLHTPIVISCNEGRREVSAVQNIANKQIDRTFAFDKVFGPSSKQKELYEQAVSPIVNEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPSDAGVIPRAVKQIFDILEAQNAEYSMKVTFLELYNEEITDLLAPEETLKFVDDKSKKPIALMEDGKGGVFVRGLEEEMVCTANEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIVATISPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMVKSALIKDLYSEVDRLKQELYAAREKNGIYIPRDRYLHEEAEKKAMVEKIERMELEAESKDKQLVELQELNNCQQLLTVELSDKLEKTEKSLEETEQSLFDLEEKHTQANATIKEKEFLILNLLKSEKALVEHAIELRADLENAASDVSNLFSKIERKDKIEEGNRILIQKFQSQLAQQLEDLHKMVAASAKQQEQQLKEMEEDMHSFVSTKAEAIENLRVRVGNLTNIYGSGIKALDNLAEELKGNNQLTFEELNSEVAKHSSALEDLFKGIALEADSLLNDLQSSLQKQEAKLTAYARQQEQAHARAVENTRAVSKITVNFFETLHMHASNLIQIVEESQFSNDQKLYELQKKFEECTAHEEKQLLEKVAEMLASSSSRKKKLVQMAVNDLRESANTKISRLRQETLTMQDSTSSVKAEWKLHMEKTESNYHEDTSAIESGKNDLVEVLQYCRKKAEVGAQQWRNAQESILSLEKRNAASVDTIIRGGMEANHLLRAQLSSAGSTTLEDAEIANKDINSSIEHSLQLDHDACGNLNSMIIPCCGDLRELKGGHYQRVVEITENAGKCLLSEYVVDELSCSTPRKRPFNLPSVSSIEELRSPSFEELLKSFWDAKSPKHANGDVRYIGPYEAAQSVRDSRVPLIAIN	1046

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2566	1046	CDD	KISc_BimC_Eg5	44	397	-	-
	Ssu3g2566	1046	ProSitePatterns	Kinesin motor domain signature.	288	299	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Ssu3g2566	1046	PRINTS	Kinesin heavy chain signature	338	359	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	PRINTS	Kinesin heavy chain signature	255	272	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	PRINTS	Kinesin heavy chain signature	289	307	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	PRINTS	Kinesin heavy chain signature	123	144	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	PANTHER	KINESIN-LIKE PROTEIN KIN-5D	1	1046	-	-
	Ssu3g2566	1046	Pfam	Kinesin motor domain	52	388	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	PANTHER	KINESIN-LIKE PROTEIN KIF11	1	1046	-	-
	Ssu3g2566	1046	Coils	Coil	476	510	-	-
	Ssu3g2566	1046	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	46	428	IPR027417	-
	Ssu3g2566	1046	SMART	kinesin_4	44	396	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	MobiDBLite	consensus disorder prediction	1	41	-	-
	Ssu3g2566	1046	Coils	Coil	672	706	-	-
	Ssu3g2566	1046	Gene3D	Kinesin motor domain	42	428	IPR036961	-
	Ssu3g2566	1046	Coils	Coil	404	424	-	-
	Ssu3g2566	1046	ProSiteProfiles	Kinesin motor domain profile.	46	388	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Ssu3g2566	1046	Coils	Coil	582	609	-	-
	Ssu3g2566	1046	Coils	Coil	434	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2566	Ssu-Chr3	78613471	78619128	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g2566	46	418	Miscellaneous Gene Families	AT5G06670	38.158	1.50e-66	236

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2566	K10398		-	gmx:100784725	1864.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g2566	3	78613471	78619128	Ssu3g2566	3	78613471	78619128	ECH
	Ssu8g0514	8	8120879	8126622	Ssu3g2566	3	78613471	78619128	PCT