Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0504 ATGTCGAGCTTACTTAATTCTTCTCTGAATGGGTCTGCTTCAAATCTTCCAGATGGTGCTGGGCGGTCCTTTGCTACGTCATTCTCTGGTTCTATTCAGGGATTGCACAACATTCATGGGAGCTTTAATGTACCCAACATGCCTAGTACACTTACATCAAGAAACTCAACAATAAATAGTGTTCCAACAGGGGGAGCCCAACAACCTTCGGCAAGCCTTGCTGGTGGAAGATTTGCATCAAATAATCTACCTGTTGCTCTGTCACAGCTATCTCATGGAACCTCTCATGGACATTCAGGAGTCAACAGTAGAGGAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGGGGGGAACATTGGGAGGATAAGCTCTGGTGGATTGTCTGTTCCAGGTCTTGCTTCTCGTCTAAATTTAACTGGAAACACTGGATCTGGTGGTTTAGGTGTGCAAGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCGCTTTCACAAAGCCATGTTCAAACAGTAAATAACTTGAACTCTATGGGGATGCTGAATGATGTGAATTCTGGTGACAGTTCACCTTTTGACATCAATGACTTCCCTCAACTGACCAGTCGTCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACACAACCAAGAGTTTAGTATTCAAAATGAAGACTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATACAGATTTTGCTATGGATATGTACCAGAAAGAACAACTTCATGATAATACTGTGTCAATGATGCAATCTCAGCATTTCTCTCAGATGGGGAGGTCTGCTGGTTTCAGTTTGGGGGGGTCATATCCATCACATCGTACACAACAGCAACAGCAGCATGCCCCTTCGGTCAGTAGCAATGGTGTCTCCTTTTCATCTGTAAACAATCAAGATCTTCTCCATATGCATGGAACGGATATTTTTCCATCTTCACACTCAAATTTTCATTCCCAGACCAGTGGATCTCCTGGCATTGGACTAAGGCCTTTAAATTCTCCGAATACGGTTTCTGGAATGGGTTCATATGACCAGCTTATCCAGCAGTATCAACAGCACCAGAACCCGTCCCAGTTCCGCCTTCAGCAAATGTCAGCTGCAAATCAGTCATTTAGGGATCAGGGCATGAAGTCTATACAAACTGCACAATCTAGTCAAGATCCATTTGGTGGACTTGGCTTGTTCAGTGTAGTCCATATAAGTGATCCTGACCTGAAATATCTTGCTCATGGAATTGATCTTACAACACTTGGGTTGAATTTGAATTCATCAGAAAATCTTTATAAGACTTTTCGGTCTCCGTGGTCTGATGAACCGGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGCCTCCTGCCCTACATCAAGGTTATTTTTCGAAGTTTTCGGTGGAAACgttgttttacatattttacaGCATGCCCAAAGATGAAGCGCAGCTATATGCAGCAAATGAACTTTACAAACGAGGTTGGTTTTATCATAAAGAGCATCGTTTATGGTTTATAAGAGTTCCCAACATGGAGCCGCTTGTTAAAACAAACACGTATGAGAGAGGATCTTACCACTGTTTTGATCCAAGCACTTTTGAAACAATCCGGAAGGataattttgttcttcattatGAAATGGTGGAAAAAAGACCGCCTTTGTCTCAACATTga 1845 0.4266 MSSLLNSSLNGSASNLPDGAGRSFATSFSGSIQGLHNIHGSFNVPNMPSTLTSRNSTINSVPTGGAQQPSASLAGGRFASNNLPVALSQLSHGTSHGHSGVNSRGGLGVSPILGNAGPRITSSMGNMVGGGNIGRISSGGLSVPGLASRLNLTGNTGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQHNQEFSIQNEDFPALPGFKGGNTDFAMDMYQKEQLHDNTVSMMQSQHFSQMGRSAGFSLGGSYPSHRTQQQQQHAPSVSSNGVSFSSVNNQDLLHMHGTDIFPSSHSNFHSQTSGSPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNPSQFRLQQMSAANQSFRDQGMKSIQTAQSSQDPFGGLGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPSTFETIRKDNFVLHYEMVEKRPPLSQH 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0504 614 MobiDBLite consensus disorder prediction 89 108 - -
Ssu8g0504 614 Gene3D - 433 614 IPR038635 -
Ssu8g0504 614 PANTHER CCR4 NOT-RELATED 2 109 IPR040168 GO:0030015
Ssu8g0504 614 PANTHER CCR4 NOT-RELATED 107 614 IPR040168 GO:0030015
Ssu8g0504 614 MobiDBLite consensus disorder prediction 46 75 - -
Ssu8g0504 614 MobiDBLite consensus disorder prediction 212 250 - -
Ssu8g0504 614 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 109 - -
Ssu8g0504 614 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 107 614 - -
Ssu8g0504 614 MobiDBLite consensus disorder prediction 314 345 - -
Ssu8g0504 614 Pfam NOT2 / NOT3 / NOT5 family 483 604 IPR007282 GO:0006355
Ssu8g0504 614 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0504 Ssu-Chr8 7973221 7984390 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0504 K12605 - gmx:100776413 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0504 8 7973221 7984390 Ssu8g0504 8 7973221 7984390 ECH
Ssu8g0504 8 7973221 7984390 Ssu3g2572 3 78710103 78716227 PCT