Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2572 ATGTCGGGGTTACTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTTTGCTACATCATTTTCTGGTCAGTCTGGTGCAGCCTCCCCAATTTTTCATCACACTGGAGCTATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCTGGTACACTCACATCAAGAAATTCAACTATAAATAATGTACCATCGGGGGGTGTTCAGCAACCCACTGGAAGCCTTTCTAGTGGAAGATTTACATCCAACAATCTGCCTGTTGCATTGTCTCAGCTATCTCATGGAAGCTCCCATGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCTACATCTGCTGCAGTTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGTAGGTCCTCGAATCACAAGTTCTGTGGGAAACATGGTTGGAGGAGGGAATATTGGAAGGACTGGTGGAGGATTGTCTGTGCCTGCTCTTGCGTCTCGCCTAAATTTGGGTGCAAACAGTGGATCCGGTGGTTTAGGTATGCAAGGACAGAATCGGTTGATGAGTGGTGTGCTTCCACAAGGATCTCCTCAAGTAATTTCAATGCTAGGAAATGCTTATCCTAGTGCTGGAGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTAAGTAACTTGAACTCTATGGGGATGTTGAATGATGTGAATACTAATGACAACTCACCTTTTGATATCAATGACTTCCCTCAACTGACAAGTCGTCCTAGCTCTGCTGGAGGGCCTCAAGGGCAGTTGGgttcTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGCGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTGCCAATGATGCAATCCCAGCATTTCTCTATGGGAAGGTCAGCTGGTTTCAGTTTAGGGGGTACATATTCATCACATCGAGCACAACAGCAACAGCATGCTCCTTCAGTCAGTAGTGGCAATGTCTCTTTTTCATCTGTTAACAACCAGGATCTTCTCCATCTACATGGATCAGATATTTTTCCATCTTCACATTCAACCTATCATTCACAGACCAGTGGACCTCCTGGCATTGGATTAAGGCCTCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATACGACCAGCTCATCCAGCAATATCAACAACACCAGAACCAATCCCAGTTCCGCCTTCAAATGTCAGCTGTAAATCAGTCTTTTAGGGATCAGGGCATGAAGTCTATTCAGACCGCACAATCTACACCTGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTGgggttaaatttgaattcatcAGAAAATCTTCACAAGACCTTTGGGTCTCCGTGGTCTGATGAACCAGCTAAGGGCGATCCAGAGTTTAATGTGCCACAATGTTATTACGCTAAACAGCCACCTGCTGTACATCAAGgttatttttcaaagttttcgGTGGAAAcattgttttacatattttacaGCATGCCCAAAGATGAAGCACAATTATATGCCGCCAATGAGCTTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACTAACACGTACGAGAGAGGATCTTATCACTGTTTCGAACCAAGCATATTTGAAACCGTTCGCAAGGataattttgttcttcattatGAAATGTTGGAAAAGAGACCGCATCTGCCTCAACATTAA 1986 0.4215 MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGAIQGLHNIHGSFNVPNMPGTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVSPILGNVGPRITSSVGNMVGGGNIGRTGGGLSVPALASRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNAYPSAGGPLSQSHVQAVSNLNSMGMLNDVNTNDNSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFSMGRSAGFSLGGTYSSHRAQQQQHAPSVSSGNVSFSSVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVPQCYYAKQPPAVHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRPHLPQH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2572 661 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 661 - -
Ssu3g2572 661 MobiDBLite consensus disorder prediction 264 300 - -
Ssu3g2572 661 MobiDBLite consensus disorder prediction 414 442 - -
Ssu3g2572 661 MobiDBLite consensus disorder prediction 370 393 - -
Ssu3g2572 661 MobiDBLite consensus disorder prediction 264 295 - -
Ssu3g2572 661 Gene3D - 480 661 IPR038635 -
Ssu3g2572 661 MobiDBLite consensus disorder prediction 59 92 - -
Ssu3g2572 661 Pfam NOT2 / NOT3 / NOT5 family 530 652 IPR007282 GO:0006355
Ssu3g2572 661 PANTHER CCR4 NOT-RELATED 2 661 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2572 Ssu-Chr3 78710103 78716227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2572 K12605 - gmx:100807026 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2572 3 78710103 78716227 Ssu3g2572 3 78710103 78716227 ECH
Ssu8g0504 8 7973221 7984390 Ssu3g2572 3 78710103 78716227 PCT