Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0503 ATGGCAGCACCAGCGGTGCAGGCAGTAAACACCACTAGGAAAAAAATGACGAAACAATTAACAGGAAAAAGGGATGATACACCTTTGCATTCTGCAACAAGAGCAGGGAATTTGGCTGTGCTGAAGGATACCATTAAGGGAACTGATGAGGCTGAATTGCATGAGTTATTAGCCAAGCAGAATCAAGATGGAGAAACACTCCTTTATATAGCTGCTGAATATGGTTACAATGATGTGGTCAGGGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCATTGCACATTGCTGCCAAACAAGGGGATTTAGATGTACTGAAGATCCTTATGGAGGCTCATCCTGAGTCGTCAATGACTGTGGATCCATCCAACACCACAGCTTTGCACACAGCTGCAATACAAGGGCATACTGAGATAGTGAAATTCCTATTGGAAGAAGGAAGTAGCCTGGCAACCATTGCTAGGAGTAATGGGAAAACAGCTCTGCATTCTGCTGCAAGAAATGGACATTTGCAGGTTGTGAAAGCACTTCTTGAGAAGGAGCCCGGGGTTGCAACACGGACCGATAAGAAGGGCCAGACAGCACTTCACATGGCAGTGAAGGGACAGAATCTTGCGGTGGTGGAGGAGTTGATAAAAGCAGATCCCTCATCAATAAACATGGTTGATAACAAGGGAAACACTGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCAGATTGTGAAGTTGCTTCTAAAACAGAAGGAAACGGTTACAAGTGCAGTGAACAGATGTGGTGAAACTTCAGTAGACACTGCTGAGAAAACGGGGAACCATGATGTGAAAGCCATTCTGGTGGAACATGGTGTTGAGAGTGCGAGGACCATAAAGCCCCCCCAGGGCACAACGGCTACTACAGCCCGTGAGTTGAAACAAACGGTGAGTGACATAAAGCACGAGGTCCATCACCAGTTGGAACACACTCGCCAAACCAGAAAACGCGTTCAAGGGATTGCCAAACGCATCAACAAAATGCATGCCGAAGGACTCAACAATGCAATCAACTCCACAACTGTGGTGGCAGTCCTGATTGCCACAGTCGCCTTCGCTGCCATTTTCACAGTCCCTGGCCAATTTGTTGATGACCCAAACAACATTCCTCCGGGGATGTCACTTGGTGAAGCAAACATAGCCCCACAAGCCCCGTTCATCATTTTCTTTGTGCTTGATTCCATTGCACTCTTTATCTCtttggcggtggtggtggtgcaaaCCTCGGTTGTGGTTATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCGTGATCAACAAGCTAATGTGGCTGGCTTGTGTGCTTGTTTCGGTGGCCTTCTTGGCATTGTCATTTGTAGTGGTGGGAAAGGAAGAGAGGTGGCTGGCCATAGGAGTGACCATTATAGGGACAACCATCATGGCTACAACCTTGGGAACCATGTGTTACTGGGTCATTAGGCATCGTATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCATTGCAAAGCAGGTCAAAGTCTTTTTCGGTGTCGGCTTTTTCAGATTCTGAGCTACTAAACAATGAGTATTGCAAGAAAATGTATGCGATTTAG 1638 0.4536 MAAPAVQAVNTTRKKMTKQLTGKRDDTPLHSATRAGNLAVLKDTIKGTDEAELHELLAKQNQDGETLLYIAAEYGYNDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVLKILMEAHPESSMTVDPSNTTALHTAAIQGHTEIVKFLLEEGSSLATIARSNGKTALHSAARNGHLQVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLAVVEELIKADPSSINMVDNKGNTALHIATRKGRAQIVKLLLKQKETVTSAVNRCGETSVDTAEKTGNHDVKAILVEHGVESARTIKPPQGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPPGMSLGEANIAPQAPFIIFFVLDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLVSVAFLALSFVVVGKEERWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRNIRKSSLQSRSKSFSVSAFSDSELLNNEYCKKMYAI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat profile. 98 120 IPR002110 GO:0005515
Ssu8g0503 545 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat region circular profile. 98 120 - -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Ssu8g0503 545 Pfam Ankyrin repeats (3 copies) 14 86 IPR002110 GO:0005515
Ssu8g0503 545 Pfam Ankyrin repeats (3 copies) 103 190 IPR002110 GO:0005515
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Ssu8g0503 545 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 6 545 - -
Ssu8g0503 545 SUPERFAMILY Ankyrin repeat 28 293 IPR036770 -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Ssu8g0503 545 PANTHER ANKYRIN REPEAT PLANT PROTEIN 6 545 - -
Ssu8g0503 545 Gene3D - 4 161 IPR036770 -
Ssu8g0503 545 Pfam Domain of unknown function 351 467 IPR026961 -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat profile. 200 222 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 200 230 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 268 297 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 24 53 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 234 263 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 63 92 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 166 195 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 132 161 IPR002110 GO:0005515
Ssu8g0503 545 SMART ANK_2a 98 129 IPR002110 GO:0005515
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat region circular profile. 234 256 - -
Ssu8g0503 545 Pfam Ankyrin repeats (many copies) 203 255 IPR002110 GO:0005515
Ssu8g0503 545 Gene3D - 162 339 IPR036770 -
Ssu8g0503 545 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0503 Ssu-Chr8 7967962 7970368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0503 13 545 Miscellaneous Gene Families AT1G07710 74.672 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0503 - - gmx:100791519 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0503 8 7967962 7970368 Ssu8g0503 8 7967962 7970368 ECH
Ssu8g0503 8 7967962 7970368 Ssu3g2575 3 78731806 78734957 ECH