Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g2575 | ATGGATACACCCAATATGCAGCCACAAGCTGCATCAACAAGCACACCaaggaaaaaaatgacaaaacaatTGACAGGTAAAAAGGATGATACACCTTTGCACTCTGCAGCAAGAGCAGGGAATCTGAGTGTTCTGAAAGACACAGTTAGTGGTAGTGAAGAGGGTGAACTGCGTGTGTTGTTGACAAAGCAGAACCATGCTGGAGAAACCGCGCTTTATGTTGCTGCTGAATATGGGTATGTTGATATGGTTAGGGAGATGATTCAATACTATGATCTTGCTGATGCTGGAATTAAGGCCAGGAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGATGTTGTGAAGATCCTAATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCCCTGCACACTGCTGCAACACAAGGGCATACTGAGATAGTCAAGCTTCTATTGGAAGCAGGTAGTAATTTGGTAATCATTGCTAGAAGTAATTGGAAAACAGCTTTGCATTCTGCTGCGAGAAATGGACATTTGGAGGTTGTGAAAGCGCTTCTGGAGAAGGAGCCTGCGGCTGCAACGCGGACTGATAAGAAGGGACAGACAGCGCTTCACATGGCAGTGAAGGGACAGAgtcttgtggtggtggaggagtTGATCAAAGCTGATCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACGGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCAGATTGTTAAGTTGCTTCTTGGACAGGCAGAAACCGATACCTTGGCAGTTAATAGATCTGGCGAAACAGCATTAGACACTGCTGAGAAAACTGGGAACTCTCAAGCTAAAGACATTCTCCTGGAACACGGTGTTCGAAGTGCCAAAGCCATAAAGGGTCAGCCAACAACAGCTACAGCCCGTGAGTTGAAACAAACTGTGAGTGACATAAAACATGAAGTCCACTACCAGTTGGAACACACCCGGCAAACTAGAAGAGGTGTCCAAGGCATTGCCAAACGTATCAACAAAATGCATGCTGAAGGACTCAACAATGCAATCAACTCCACAACTGTGGTTGCAGTCCTCATTGCCACAGTTGCCTTTGCAGCTATTTTCACTGTCCCTGGCCAATTCGCTGATGATCCAAAAGATCTCCCTCCAGGGGTGACCACTGGTGAAGCAAACATAGCCCCACAATTtccatttctcattttctttgtctttGATTCCATTGCCCTCTTCATTTCTCTGGCTGTGGTGGTGGTGCAAACCTCGGTTGTGATCATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATTAACAAGCTAATGTGGTTGGCTTGCGTGCTCATTTCTGTGGCCTTCTTGGCATTGTCATTTGTAGTGGTGGGGAAGGATCACAAGTGGCTAGCAATTGGAGTCACAATCATAGGGACAACTATAATGGCTACAACCTTGGGCACCATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAATTTAAGGAGCATGCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCCTTTTCAGTATCAGTTATGTCAGATTCTGAGCTACTAAACAATGAGCGGAAGATAATGTATGCGATTTAG | 1641 | 0.4406 | MDTPNMQPQAASTSTPRKKMTKQLTGKKDDTPLHSAARAGNLSVLKDTVSGSEEGELRVLLTKQNHAGETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVVKILMEAHPELSMTVDPSNTTALHTAATQGHTEIVKLLLEAGSNLVIIARSNWKTALHSAARNGHLEVVKALLEKEPAAATRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATRKGRAQIVKLLLGQAETDTLAVNRSGETALDTAEKTGNSQAKDILLEHGVRSAKAIKGQPTTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKDLPPGVTTGEANIAPQFPFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDHKWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRSMRKSSMGSRSRSFSVSVMSDSELLNNERKIMYAI | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2575 | 546 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat region circular profile. | 102 | 124 | - | - | |
| Ssu3g2575 | 546 | Gene3D | - | 167 | 339 | IPR036770 | - | |
| Ssu3g2575 | 546 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Ssu3g2575 | 546 | Pfam | Ankyrin repeats (3 copies) | 172 | 229 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | Pfam | Ankyrin repeats (3 copies) | 94 | 163 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | Pfam | Ankyrin repeats (3 copies) | 19 | 90 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | Gene3D | - | 6 | 166 | IPR036770 | - | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 238 | 268 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 28 | 59 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 102 | 131 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 272 | 302 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 136 | 165 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 204 | 234 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 67 | 96 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SMART | ANK_2a | 170 | 200 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | Pfam | Ankyrin repeat | 239 | 264 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat profile. | 238 | 259 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat region circular profile. | 170 | 193 | - | - | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat profile. | 102 | 134 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 7 | 546 | - | - | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat profile. | 136 | 168 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat region circular profile. | 136 | 163 | - | - | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat region circular profile. | 238 | 259 | - | - | |
| Ssu3g2575 | 546 | PANTHER | ANKYRIN REPEAT PLANT PROTEIN | 7 | 546 | - | - | |
| Ssu3g2575 | 546 | Pfam | Domain of unknown function | 353 | 469 | IPR026961 | - | |
| Ssu3g2575 | 546 | ProSiteProfiles | Ankyrin repeat profile. | 170 | 202 | IPR002110 | GO:0005515 | |
| Ssu3g2575 | 546 | SUPERFAMILY | Ankyrin repeat | 32 | 297 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu3g2575 | Ssu-Chr3 | 78731806 | 78734957 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2575 | 11 | 546 | Miscellaneous Gene Families | AT1G07710 | 72.253 | 0.0 | 729 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g2575 | - | - | gmx:100808971 | 923.694 |
Event-related genes