Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0502 aTGGAGTTCCTCACTGTACTTTGTGGTGCTACAGCATTGTACTTGTGTTTCCTGATCTGGAAATTGTTCGATCAGAGAAGGGACCAAGAGTGTTACATATTGGACTACCAACTGTACAAGCCAAACGATGAAAGAAAGCTTGGAACTGAATGCTGTGGCAAGATCATAGGAAGGAACAAGCGCTTGGGTCTGAATGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCTGGCATTGGTGAGGAAACTTATGCCCCAAGAAACGTCATCGAGGGCCGTGAGGCAAATCCAACATTGAATGATGGGATCACAGAGATGGAGGAGTTTTTCCACGACAGCATTGCCAAGCTCCTTGCAAGGTCAGGCATTTCGCCCTCACAGATCGATGTCCTTGTGGTGAATGTCTCTATGTTCGCCGTTGTTCCTTCCTTAACTTCAAGAATCATTAACCACTACAAAATGAGGCATGACATAAAGGCTTACAACCTCACTGGCATGGGTTGCAGTGCGAGCCTGATTTCCTTGGACATCATAAGGAACGTTTTCAAGTCCCAAAAGAACAAGTGTGCTCTTTTGGTGACTTCTGAGTCTCTCAGTCCAAACTGGTATGATGGCAACAACAGATCAATGATTCTTGCCAACTGTTTGTTCAGGACTGGTGGCTGTGTCATCCTTTTGACAAATAAAAGGTCCTTGAAGCACAGGGCCATGTTGAGGCTGAAGTGCTTGGTGAGGACTCATCATGGGGCAAGAGAAGATTCCTATAGTTGCTGCAATCAGAAGGAAGATGAGCAAGGCAGGCTTGGGTTTTACCTTGCCAAAAATCTTCCCAAGGCAGCTACAAGGGCTTTCGTTGATAATTTAAGGGTGTTGTCACCCAAGATTTTACCGACTAGGGAGCTGCTCAGGTTTATGATTGTGTCCCTCGTGAAAAAACTGAGGCAAACTAGTTCCCTTAAGTCTTCAAGTGGGGGATCTAACAAATCCCCTTTGAACTTCAAGACTGGGGTTGAACATTTTTGCCTCCACACAGGGGGAAAGGCTGTGATTGATGGGATTGGAATGAGCTTGGATCTGTGTGAATATGATCTTGAGCCAGCCAGGATGACACTGCACCGTTTTGGGAACACTTCAGCTAGTAGCCTGTGGTATGTGCTAGGGTACATGGAGGCCAAGAAGAGGCTCAAGAAAGGTGAAAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAAGGATCTGGGGGATGCAAATGTGTGGGACGACTGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAGTTCGGTTGGATCAACAATGTTGAGGATGCAAGCACCTTCAAACTTCCTGATTTTCTCAAcaaGTGTAACAGGAAAACGTGCTAA 1428 0.4594 MEFLTVLCGATALYLCFLIWKLFDQRRDQECYILDYQLYKPNDERKLGTECCGKIIGRNKRLGLNEYKFLLKAVVNSGIGEETYAPRNVIEGREANPTLNDGITEMEEFFHDSIAKLLARSGISPSQIDVLVVNVSMFAVVPSLTSRIINHYKMRHDIKAYNLTGMGCSASLISLDIIRNVFKSQKNKCALLVTSESLSPNWYDGNNRSMILANCLFRTGGCVILLTNKRSLKHRAMLRLKCLVRTHHGAREDSYSCCNQKEDEQGRLGFYLAKNLPKAATRAFVDNLRVLSPKILPTRELLRFMIVSLVKKLRQTSSLKSSSGGSNKSPLNFKTGVEHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISFGAGFKCNSCLWEVMKDLGDANVWDDCIDDYPPESLANPFMEKFGWINNVEDASTFKLPDFLNKCNRKTC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0502 475 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Ssu8g0502 475 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu8g0502 475 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 - -
Ssu8g0502 475 Gene3D - 66 419 IPR016039 GO:0016746
Ssu8g0502 475 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu8g0502 475 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Ssu8g0502 475 CDD CHS_like 12 417 - -
Ssu8g0502 475 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu8g0502 475 SUPERFAMILY Thiolase-like 243 420 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0502 Ssu-Chr8 7931314 7933349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0502 19 465 Acyl Lipid Metabolism Gene Families AT2G28630 70.175 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0502 K15397 - gmx:100790992 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0502 8 7931314 7933349 Ssu8g0502 8 7931314 7933349 ECH
Ssu8g0502 8 7931314 7933349 Ssu3g2577 3 78781362 78782771 ECH
Ssu8g0502 8 7931314 7933349 Ssu3g2577 3 78781362 78782771 PCT