Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2577 ATGGAGTTCCTCTATCTCCTCTACCTCGTTCCAACGTTGTGCGCGTGTTTCCTCGTCTGGAAAATGTTCGACGAGAGAAGGGACAGGGAGTGCTACATTATAGACTACCAATGCTACAAGCCCTCGAACGACAGAATGCTGGGGACAGAGTTCTGCGGCCAACTCATCAAAAGGACCGAGAATTTGGGTCCCAGCGAGTACCGCTTCCTCCTCAAAGCCATCGTGAGCTCCGGCATCGGGGAACAAACGTACGCGCCAAGAAACGTGCTCGAGGGACGCGAGGGAAGCCCCACACTGCGCGACGGCATCGAGGAAATGGAAGAGTTCTTCGACGACAGCATCGCGAGGCTCCTCGCGAAGTCCAAGGTCTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTGGCCGCCGTCCCTTCGCTGTCCTCGCGCATCGTCAACCGCTACAGAATGCGGCACGACGTTAAGGTCTACAACCTCACCGGCATGGGCTGCAGCGCCAGCCTCGTGTCCCTCGACGTGGTCAGGAACGTCTTCAAGACGCAGAGGAACAAGCTGGCGCTGTTGGTCACCTCGGAGTCCCTGAGCCCGAACTGGTATTCCGGCAGCGACAGGTCGATGATCCTCGCCAACTGTCTGTTCCGCTCCGGCGGGTGCGCCATTCTTTTAACCAACAAAAGAGCTATGAAGGACAAGGCCATGCTGAGGCTCAAGTGCCTGGTGAGGACCCACCACGGAGCGAGGGAAGAAGCCTACGGCTGCTGCATTCAGAAGGAAGACGATCAAGGAAGGCTCGGGTTCCACCTTGGGAAGACTCTTCCCAAGGCCGCCACCCGAGCCTTCGTCGATAATTTACGAGTGATAGCGCCTAAGATATTGCCCACCCGCGAGTTGTTGAGGTTTCTGTTCGCGTCGCTTATTAAGAAACTGAACAAGAGTAATTCCCCCAAGTCCACGAGCGCCGCGGCTACTAAGTCGCCGCTGAACTTCAGAACCGGGGTTGACCATTTTTGCTTGCATACCGGAGGAAAAGCCGTGATTGACGGCATCGGAATGAGCTTGGATCTGAGTGAGTACGACCTGGAGCCGGCGAGGATGACGTTGCACCGTTTTGGGAACACGTCTGCGAGCAGCTTGTGGTACGTGTTGTCGTACATGGAGGCGAAGAAGAGGCTCAAGAAGGGTGACACGGTGTTCATGATAAGCTTCGGTGCCGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGGTGAAGGACCTGGGGGATCCAAATGTGTGGGACGATTGCATTGATGACTACCCGCCAGTGTCAACGGCCAACCCCTTCATGGAAACCTATGGTTGGATCAACCAAGTGGAGGATCCCCTCACTTACGAAAATATTCCGGATTTTCTCAAGTGA 1410 0.556 MEFLYLLYLVPTLCACFLVWKMFDERRDRECYIIDYQCYKPSNDRMLGTEFCGQLIKRTENLGPSEYRFLLKAIVSSGIGEQTYAPRNVLEGREGSPTLRDGIEEMEEFFDDSIARLLAKSKVSPSEIDVLVVNISMLAAVPSLSSRIVNRYRMRHDVKVYNLTGMGCSASLVSLDVVRNVFKTQRNKLALLVTSESLSPNWYSGSDRSMILANCLFRSGGCAILLTNKRAMKDKAMLRLKCLVRTHHGAREEAYGCCIQKEDDQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPTRELLRFLFASLIKKLNKSNSPKSTSAAATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVVKDLGDPNVWDDCIDDYPPVSTANPFMETYGWINQVEDPLTYENIPDFLK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2577 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu3g2577 469 CDD CHS_like 10 417 - -
Ssu3g2577 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu3g2577 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 - -
Ssu3g2577 469 SUPERFAMILY Thiolase-like 26 420 IPR016039 GO:0016746
Ssu3g2577 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Ssu3g2577 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu3g2577 469 Gene3D - 73 419 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2577 Ssu-Chr3 78781362 78782771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2577 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 68.271 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2577 K15397 - gmx:100809149 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2577 3 78781362 78782771 Ssu3g2577 3 78781362 78782771 ECH
Ssu8g0502 8 7931314 7933349 Ssu3g2577 3 78781362 78782771 ECH
Ssu8g0502 8 7931314 7933349 Ssu3g2577 3 78781362 78782771 PCT