Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0498 atggaGATTGATCTTTCTCCCCAGTTGGCGAAGAAGGTTTACGAAGGCAGTGGTGGGTCCTACTACGCATGGTCCCCCTCCGAGCTTCCCATGCTCCGTGAAGGCAACATTGGTGCCGCCAAGTTCGCTCTTCACAAAAACGGTTTCTCACTTCCTCGTTACTCTGACTCTTCCAAAGTCGCTTATGTTCTCCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGTGATGCCTTGGCACTCCCCTTTGGTGTTGTGTCCTGGTGGTATAACAAGGAAGAAACTGAGTTGGTTGTTCTGTTCCTTGGGGACACTTCCAAGGCTCACAAGACTGGTGAATTCACTGACTTTTTTCTGGCTGGTTCCAATGGAATCTTCACAGGCTTTTCCACTGAGTTTGTGGGCAGGGCTTGGGACCTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCAGGCAAAGGCATTGTGGAGCTGGAAGGAAACATCAGCCTTCCTGAGCCTAAACAGGAGCACCGGAATGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGAGATTGGATTGGGAGCTGACCTTGTGAGGTTGGATGGAAGAGCTATGTGTTCTCCAGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGTGTTGATGGCCGTAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTTATTGTGCCAAGGTTTTTTGTGGTCTCAAAGATTGCTGATCCTGATGGAATGGAGTGGTTCTCTATCATCACCACCCCTAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCCGTGTGGAAGGCTTTATCACCTACGGTTCTGCAAGCTGCTTTCAATGTAGATTCAGGAGTTGAGCAACTGTTCCGTTCAAAGAGGACTGCCGATGCCATTTTCTTCCCCCACCAAATTAGAATAAACATTCCATTGCATCCCCCCAAATCCCCTTCCCGTCTTATCTAg 1119 0.4781 MEIDLSPQLAKKVYEGSGGSYYAWSPSELPMLREGNIGAAKFALHKNGFSLPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVSWWYNKEETELVVLFLGDTSKAHKTGEFTDFFLAGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGKGIVELEGNISLPEPKQEHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGEIGLGADLVRLDGRAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTIKAGNLFIVPRFFVVSKIADPDGMEWFSIITTPNPIFTHLAGSSSVWKALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPHQIRINIPLHPPKSPSRLI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0498 372 CDD cupin_11S_legumin_N 4 173 - -
Ssu8g0498 372 PANTHER OS03G0336100 PROTEIN-RELATED 2 364 - -
Ssu8g0498 372 PANTHER - 2 364 - -
Ssu8g0498 372 CDD cupin_11S_legumin_C 198 353 - -
Ssu8g0498 372 Gene3D Jelly Rolls 195 359 IPR014710 -
Ssu8g0498 372 Gene3D Jelly Rolls 3 194 IPR014710 -
Ssu8g0498 372 SMART Cupin_1_3 3 157 IPR006045 -
Ssu8g0498 372 SMART Cupin_1_3 195 339 IPR006045 -
Ssu8g0498 372 Pfam Cupin 199 335 IPR006045 -
Ssu8g0498 372 Pfam Cupin 10 156 IPR006045 -
Ssu8g0498 372 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Ssu8g0498 372 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Ssu8g0498 372 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Ssu8g0498 372 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Ssu8g0498 372 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Ssu8g0498 372 SUPERFAMILY RmlC-like cupins 12 345 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0498 Ssu-Chr8 7826581 7829189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0498 35 333 Miscellaneous Gene Families AT2G18540 21.203 3.66e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0498 - - vra:106758740 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0498 8 7826581 7829189 Ssu8g0498 8 7826581 7829189 ECH
Ssu8g0498 8 7826581 7829189 Ssu3g2591 3 79325832 79328710 PCT