Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2591 ATGGAGATTGGTCTCTCTCCCCAGTTGGCCAAGAAGGTGTACGGAGACAATGGTGGGTCTTACTATTCGTGGTCCCCTTCTGAGCTTCCCATGTTGCGAGAAGGGAACATTGGTGCTGCCAAACTAGCTCttgaaaaaaatggttttgCCCTTCCTCGTTACTCTGATTCTTCCAAGGTTGCATACGTTCTGCAAGGAAGTGGAATTGCTGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGTGATGCTTTGGCACTCCCATTTGGTGTGGTGACATGGTGGTATAACAAGGAGGAATCCGAATTAGTTATTCTATTCTTGGGCGATACTTCAAAAGCCCACAAGGCTGGTGAATTTACTGATTTTTTTCTGACTGGTTCCAATGGAATCTTCACAGGCTTTTCAACTGAGTTTGTGGGCAGGGCTTGGGACTTAGAAGAGAAAGACGTGAAAACCCTTGTTGGAAAACAATCAGGCAAGGGTATTGTGAAGCTTGAAGGGAATATCAACCTTCCTCAGCCCAAAGAGGAACATAGGAAGGGCATGGTATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGCTGGATGGGAAAGCCATGTGTTCTCCTGGATTCTCTTGTGATTCTGCATTGCAGGTTACTTACATTGTCAGAGGGAGTGGTCGTGTTCAGGTTGTTGGTGTGGATGGCCGCAGGGTTTTGGAGACAACTATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTCGTCTCAAAGATTGCTGACCCTGATGGAATGGCGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACGCACCTGGCTGGAAGTTCTTCGGTGTGGAAGGCTCTTTCACCTACGGTTCTGCAGGCTGCTTTCAATGTAGATGCAGGAGTTGAGCAACACTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCTCTCCTCCAAATTAA 1071 0.4603 MEIGLSPQLAKKVYGDNGGSYYSWSPSELPMLREGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGSGIAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEESELVILFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGKGIVKLEGNINLPQPKEEHRKGMVLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTIKAGNLFIVPRFFVVSKIADPDGMAWFSIITTPNPVFTHLAGSSSVWKALSPTVLQAAFNVDAGVEQHFRSKRTADAIFFSPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2591 356 Pfam Cupin 199 335 IPR006045 -
Ssu3g2591 356 Pfam Cupin 11 156 IPR006045 -
Ssu3g2591 356 PANTHER - 3 347 - -
Ssu3g2591 356 PANTHER OS03G0336100 PROTEIN-RELATED 3 347 - -
Ssu3g2591 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Ssu3g2591 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Ssu3g2591 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Ssu3g2591 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Ssu3g2591 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Ssu3g2591 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Ssu3g2591 356 CDD cupin_11S_legumin_C 198 353 - -
Ssu3g2591 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Ssu3g2591 356 Gene3D Jelly Rolls 4 194 IPR014710 -
Ssu3g2591 356 CDD cupin_11S_legumin_N 5 173 - -
Ssu3g2591 356 SMART Cupin_1_3 195 339 IPR006045 -
Ssu3g2591 356 SMART Cupin_1_3 3 157 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2591 Ssu-Chr3 79325832 79328710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2591 35 333 Miscellaneous Gene Families AT2G18540 22.063 3.55e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2591 - - gmx:100782055 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2591 3 79325832 79328710 Ssu3g2591 3 79325832 79328710 ECH
Ssu8g0498 8 7826581 7829189 Ssu3g2591 3 79325832 79328710 PCT